Expression of 1-1-2.3.3.4

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.95220.722
27DAP/17DAP1.088650.91
39DAP/27DAP0.940990.641
41DAP/39DAP1.162090.624
42DAP/41DAP1.116390.843
43DAP/42DAP0.943420.877
47DAP/43DAP1.843460.415
52DAP/47DAP0.953890.842
57DAP/52DAP1.212730.96

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.220470.065
17DAP/reference1.255370.017
27DAP/reference1.082330.365
39DAP/reference0.961710.734
41DAP/reference1.369910.012
42DAP/reference1.04170.812
43DAP/reference0.872860.691
47DAP/reference1.077860.046
52DAP/reference1.129270.335
57DAP/reference1.66706

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.95020.595
27DAP/17DAP1.002890.969
39DAP/27DAP1.090850.596
41DAP/39DAP0.975830.986
42DAP/41DAP0.939550.595
43DAP/42DAP0.823990.089
47DAP/43DAP0.940510.734
52DAP/47DAP1.298240.408
57DAP/52DAP1.280750.238
57DAP/7DAP1.383991

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.985090.445
17DAP/reference1.206930.399
27DAP/reference1.407540.011
39DAP/reference1.062491
41DAP/reference0.991680.646
42DAP/reference0.955760.436
43DAP/reference1.114380.511
47DAP/reference1.007651
52DAP/reference0.909760.278
57DAP/reference0.925890.28

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.011871
17DAP/reference1.078820.496
27DAP/reference1.049190.988
39DAP/reference0.92660.416
41DAP/reference1.012740.735
42DAP/reference0.888980.189
43DAP/reference1.111260.655
47DAP/reference0.854680.019
52DAP/reference1.062480.629
57DAP/reference0.891480.61

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.155610.408
17DAP/reference0.936510.488
27DAP/reference0.982120.657
39DAP/reference1.0261
41DAP/reference1.04831
42DAP/reference0.96460.552
43DAP/reference0.911180.305
47DAP/reference0.895130.174
52DAP/reference1.397640.908
57DAP/reference1.243640.354

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.986561
26DAP/20DAP0.928521
34DAP/26DAP0.775420.35
51DAP/34DAP0.851230.22
52DAP/51DAP1.044180.915
53DAP/52DAP0.878350.484
55DAP/53DAP1.051821
57DAP/55DAP1.035340.94
62DAP/57DAP1.60171
68DAP/62DAP1.498640.626
68DAP/14DAP1.21393

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.048710.865

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.29910.478
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.24823
Mature Eggplant/Ripe Tomato1.02335

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M821.07908
12-2/M82N/AN/A
12-4/M820.88384
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M820.9169
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M821.046190.496
6-2/M82N/AN/A
6-3/M820.57897
7-1/M82N/AN/A
7-2/M821.29614
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.839610.321
IL2-6/WTpooled1.06634
IL7-5/WTpooled0.948141
IL7-3/WTpooled0.98318
IL12-4/WTpooledN/AN/A
IL1-4/WTpooled1.008131
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.736660.75

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.82317
DC3000/delta hrp 6h1.134821
DC3000/delta hrp 12h1.033011
DC3000/delta hrp 24h1.062820.673

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB3.0253

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60h0.80290.257

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.93618
Var 0h1.183750.936
Var 12h I row2-row11.435820.473
Var 12h NI row2-row11.408120.649
Var 36h I row2-row11.362430.489
Var 36h NI row2-row10.940590.706
Var 60h I row2-row10.795060.306
Var 60h NI row2-row10.92741
Time course 0hI-0hNI1.093780.603
Time course 12hI-12hNI0.902560.377
Time course 36hI-36hNI1.159380.248
Time course 60hI-60hNI2.433380.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.058050.305
transgenic ySAMdc/azygous control (breaker)1.118931
transgenic ySAMdc/azygous control (red)0.854321

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.06840.046

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.864381
Manapal/WT (break)1.073421
Manapal/WT (red)1.188420.413