Expression of 1-1-2.3.3.4
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.9522 | 0.722 |
27DAP/17DAP | 1.08865 | 0.91 |
39DAP/27DAP | 0.94099 | 0.641 |
41DAP/39DAP | 1.16209 | 0.624 |
42DAP/41DAP | 1.11639 | 0.843 |
43DAP/42DAP | 0.94342 | 0.877 |
47DAP/43DAP | 1.84346 | 0.415 |
52DAP/47DAP | 0.95389 | 0.842 |
57DAP/52DAP | 1.21273 | 0.96 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.22047 | 0.065 |
17DAP/reference | 1.25537 | 0.017 |
27DAP/reference | 1.08233 | 0.365 |
39DAP/reference | 0.96171 | 0.734 |
41DAP/reference | 1.36991 | 0.012 |
42DAP/reference | 1.0417 | 0.812 |
43DAP/reference | 0.87286 | 0.691 |
47DAP/reference | 1.07786 | 0.046 |
52DAP/reference | 1.12927 | 0.335 |
57DAP/reference | 1.66706 | |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.9502 | 0.595 |
27DAP/17DAP | 1.00289 | 0.969 |
39DAP/27DAP | 1.09085 | 0.596 |
41DAP/39DAP | 0.97583 | 0.986 |
42DAP/41DAP | 0.93955 | 0.595 |
43DAP/42DAP | 0.82399 | 0.089 |
47DAP/43DAP | 0.94051 | 0.734 |
52DAP/47DAP | 1.29824 | 0.408 |
57DAP/52DAP | 1.28075 | 0.238 |
57DAP/7DAP | 1.38399 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98509 | 0.445 |
17DAP/reference | 1.20693 | 0.399 |
27DAP/reference | 1.40754 | 0.011 |
39DAP/reference | 1.06249 | 1 |
41DAP/reference | 0.99168 | 0.646 |
42DAP/reference | 0.95576 | 0.436 |
43DAP/reference | 1.11438 | 0.511 |
47DAP/reference | 1.00765 | 1 |
52DAP/reference | 0.90976 | 0.278 |
57DAP/reference | 0.92589 | 0.28 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.01187 | 1 |
17DAP/reference | 1.07882 | 0.496 |
27DAP/reference | 1.04919 | 0.988 |
39DAP/reference | 0.9266 | 0.416 |
41DAP/reference | 1.01274 | 0.735 |
42DAP/reference | 0.88898 | 0.189 |
43DAP/reference | 1.11126 | 0.655 |
47DAP/reference | 0.85468 | 0.019 |
52DAP/reference | 1.06248 | 0.629 |
57DAP/reference | 0.89148 | 0.61 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.15561 | 0.408 |
17DAP/reference | 0.93651 | 0.488 |
27DAP/reference | 0.98212 | 0.657 |
39DAP/reference | 1.026 | 1 |
41DAP/reference | 1.0483 | 1 |
42DAP/reference | 0.9646 | 0.552 |
43DAP/reference | 0.91118 | 0.305 |
47DAP/reference | 0.89513 | 0.174 |
52DAP/reference | 1.39764 | 0.908 |
57DAP/reference | 1.24364 | 0.354 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.98656 | 1 |
26DAP/20DAP | 0.92852 | 1 |
34DAP/26DAP | 0.77542 | 0.35 |
51DAP/34DAP | 0.85123 | 0.22 |
52DAP/51DAP | 1.04418 | 0.915 |
53DAP/52DAP | 0.87835 | 0.484 |
55DAP/53DAP | 1.05182 | 1 |
57DAP/55DAP | 1.03534 | 0.94 |
62DAP/57DAP | 1.60171 | |
68DAP/62DAP | 1.49864 | 0.626 |
68DAP/14DAP | 1.21393 | |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.04871 | 0.865 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.2991 | 0.478 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.24823 | |
Mature Eggplant/Ripe Tomato | 1.02335 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 1.07908 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.88384 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.9169 | |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | 1.04619 | 0.496 |
6-2/M82 | N/A | N/A |
6-3/M82 | 0.57897 | |
7-1/M82 | N/A | N/A |
7-2/M82 | 1.29614 | |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.83961 | 0.321 |
IL2-6/WTpooled | 1.06634 | |
IL7-5/WTpooled | 0.94814 | 1 |
IL7-3/WTpooled | 0.98318 | |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | 1.00813 | 1 |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.73666 | 0.75 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.82317 | |
DC3000/delta hrp 6h | 1.13482 | 1 |
DC3000/delta hrp 12h | 1.03301 | 1 |
DC3000/delta hrp 24h | 1.06282 | 0.673 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 3.0253 | |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | 0.8029 | 0.257 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.93618 | |
Var 0h | 1.18375 | 0.936 |
Var 12h I row2-row1 | 1.43582 | 0.473 |
Var 12h NI row2-row1 | 1.40812 | 0.649 |
Var 36h I row2-row1 | 1.36243 | 0.489 |
Var 36h NI row2-row1 | 0.94059 | 0.706 |
Var 60h I row2-row1 | 0.79506 | 0.306 |
Var 60h NI row2-row1 | 0.9274 | 1 |
Time course 0hI-0hNI | 1.09378 | 0.603 |
Time course 12hI-12hNI | 0.90256 | 0.377 |
Time course 36hI-36hNI | 1.15938 | 0.248 |
Time course 60hI-60hNI | 2.43338 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.05805 | 0.305 |
transgenic ySAMdc/azygous control (breaker) | 1.11893 | 1 |
transgenic ySAMdc/azygous control (red) | 0.85432 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.0684 | 0.046 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | N/A | N/A |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.86438 | 1 |
Manapal/WT (break) | 1.07342 | 1 |
Manapal/WT (red) | 1.18842 | 0.413 |
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