Expression of 1-1-2.3.4.11
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.07776 | 0.893 |
27DAP/17DAP | 0.80408 | 0.467 |
39DAP/27DAP | 1.12829 | 0.899 |
41DAP/39DAP | 1.6231 | 0.236 |
42DAP/41DAP | 1.5995 | 0.843 |
43DAP/42DAP | 1.02643 | 0.937 |
47DAP/43DAP | 0.91357 | 0.613 |
52DAP/47DAP | 1.87003 | 0.538 |
57DAP/52DAP | 0.78433 | 0.754 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.94332 | 0.277 |
17DAP/reference | 0.96032 | 0.26 |
27DAP/reference | 0.93466 | 0.17 |
39DAP/reference | 1.0385 | 0.486 |
41DAP/reference | 0.98266 | 0.667 |
42DAP/reference | 0.92826 | 0.075 |
43DAP/reference | 1.16967 | 0.013 |
47DAP/reference | 0.95786 | 0.161 |
52DAP/reference | 0.92259 | 0.25 |
57DAP/reference | 0.87724 | 0.068 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.86819 | 0.158 |
27DAP/17DAP | 1.27805 | 0.167 |
39DAP/27DAP | 0.9976 | 1 |
41DAP/39DAP | 1.05255 | 0.895 |
42DAP/41DAP | 0.95117 | 0.644 |
43DAP/42DAP | 1.14342 | 0.297 |
47DAP/43DAP | 0.99058 | 0.954 |
52DAP/47DAP | 1.12481 | 0.603 |
57DAP/52DAP | 1.21042 | 0.455 |
57DAP/7DAP | 1.42109 | 0.23 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.8415 | 0.115 |
17DAP/reference | 0.8352 | 0.039 |
27DAP/reference | 0.93521 | 0.101 |
39DAP/reference | 0.77367 | 0.011 |
41DAP/reference | 0.73058 | 0.017 |
42DAP/reference | 0.80005 | 0.011 |
43DAP/reference | 0.67231 | 0.013 |
47DAP/reference | 0.8352 | 0.222 |
52DAP/reference | 0.65592 | 0.012 |
57DAP/reference | 0.6902 | 0.014 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.14713 | 0.224 |
17DAP/reference | 1.00699 | 1 |
27DAP/reference | 1.04506 | 0.822 |
39DAP/reference | 0.89716 | 0.097 |
41DAP/reference | 1.02961 | 1 |
42DAP/reference | 0.90408 | 0.081 |
43DAP/reference | 1.33636 | 0.119 |
47DAP/reference | 1.00085 | 0.79 |
52DAP/reference | 1.08658 | 0.528 |
57DAP/reference | 1.17135 | 0.908 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.86035 | 0.082 |
17DAP/reference | 0.97143 | 0.636 |
27DAP/reference | 0.74864 | 0.039 |
39DAP/reference | 0.73793 | 0.022 |
41DAP/reference | 0.84586 | 0.064 |
42DAP/reference | 0.87939 | 0.041 |
43DAP/reference | 0.79606 | 0.03 |
47DAP/reference | 1.10833 | 0.228 |
52DAP/reference | 0.81027 | 0.186 |
57DAP/reference | 0.84223 | 0.171 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.92862 | 1 |
26DAP/20DAP | 1.60772 | 0.103 |
34DAP/26DAP | 0.87409 | 0.763 |
51DAP/34DAP | 1.90883 | 0.039 |
52DAP/51DAP | 1.12079 | 0.146 |
53DAP/52DAP | 1.02541 | 0.921 |
55DAP/53DAP | 1.10709 | 0.599 |
57DAP/55DAP | 1.11073 | 0.745 |
62DAP/57DAP | 1.28441 | 0.569 |
68DAP/62DAP | 0.83944 | 0.668 |
68DAP/14DAP | 0.90493 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.87044 | 0.211 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.80986 | 0.261 |
Mature Green Tomato/Ripe Tomato | 1.13499 | 0.835 |
Immature Eggplant/Mature Eggplant | 0.8356 | 0.197 |
Ripe Pepper/Ripe Tomato | 1.7292 | 1 |
Mature Eggplant/Ripe Tomato | 1.6772 | 0.373 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.01169 | 1 |
1-1-2/M82 | 0.84302 | 1 |
12-2/M82 | 1.17582 | 1 |
12-4/M82 | 0.9448 | 1 |
1-3/M82 | 0.95475 | 0.441 |
2-1-1/M82 | 0.9343 | 0.92 |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.18066 | 0.695 |
3-2/M82 | N/A | N/A |
4-1-1/M82 | 1.23224 | 1 |
4-1/M82 | 0.99681 | 1 |
4-3-2/M82 | 1.12575 | |
4-3/M82 | 0.94267 | |
5-3/M82 | 0.91748 | 0.642 |
6-2/M82 | 0.7565 | |
6-3/M82 | 0.98723 | 1 |
7-1/M82 | 0.96425 | |
7-2/M82 | 1.02195 | 1 |
9-3-2/M82 | 1.03601 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.91965 | 0.473 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.05795 | 1 |
IL12-4/WTpooled | 1.10756 | 0.523 |
IL1-4/WTpooled | 0.85994 | |
WT/WTpooled | 1.04776 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.01929 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.05483 | 0.921 |
DC3000/delta hrp 6h | 0.86497 | 0.95 |
DC3000/delta hrp 12h | 1.16164 | 1 |
DC3000/delta hrp 24h | 1.03975 | 0.62 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.54987 | 0.042 |
DC3000 delta B/DC3000 delta AB | 1.74156 | 0.071 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.95999 | 1 |
Exp 36h | 1.09586 | 0.693 |
Exp 60h | 1.04038 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 1.07199 | 0.339 |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.1206 | 0.297 |
transgenic ySAMdc/azygous control (breaker) | 1.546 | 0.162 |
transgenic ySAMdc/azygous control (red) | 0.97651 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.09215 | 0.089 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.8853 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.0127 | 1 |
Manapal/WT (break) | 1.45764 | 0.123 |
Manapal/WT (red) | 1.13012 | 1 |
|
|