Expression of 1-1-2.3.6.12

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.825180.347
27DAP/17DAP0.995390.99
39DAP/27DAP1.199530.691
41DAP/39DAP0.839050.385
42DAP/41DAP1.263240.832
43DAP/42DAP0.93510.829
47DAP/43DAP0.865490.568
52DAP/47DAP1.019910.993
57DAP/52DAP1.173970.907

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.031870.846
17DAP/reference0.994820.777
27DAP/reference0.938770.095
39DAP/reference1.030280.747
41DAP/reference1.003030.963
42DAP/reference1.083540.08
43DAP/reference0.934690.273
47DAP/reference1.065770.154
52DAP/reference0.989280.515
57DAP/reference0.876110.016

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.999440.847
27DAP/17DAP0.910470.58
39DAP/27DAP1.037230.77
41DAP/39DAP0.982760.959
42DAP/41DAP1.015321
43DAP/42DAP0.953160.597
47DAP/43DAP1.035210.833
52DAP/47DAP0.93360.753
57DAP/52DAP1.058380.759
57DAP/7DAP1.024161

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.059880.664
17DAP/reference1.412910.269
27DAP/reference1.296640.664
39DAP/reference1.010131
41DAP/reference1.228310.389
42DAP/reference1.041491
43DAP/reference0.96520.421
47DAP/reference1.01061
52DAP/reference1.165110.139
57DAP/reference1.204680.158

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.119570.113
17DAP/reference1.113430.028
27DAP/reference1.129140.292
39DAP/reference1.196590.116
41DAP/reference1.071270.737
42DAP/reference1.04890.826
43DAP/reference1.132660.466
47DAP/reference0.961930.221
52DAP/reference1.081110.069
57DAP/reference1.084060.083

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.007750.804
17DAP/reference0.952120.624
27DAP/reference1.306390.26
39DAP/reference1.103270.353
41DAP/reference1.620460.029
42DAP/reference1.186690.06
43DAP/reference1.342930.028
47DAP/reference1.0660.089
52DAP/reference1.044480.801
57DAP/reference1.031850.673

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.09210.966
26DAP/20DAP2.308510.099
34DAP/26DAP0.808270.431
51DAP/34DAP0.689450.049
52DAP/51DAP1.174610.167
53DAP/52DAP0.972450.882
55DAP/53DAP0.877220.21
57DAP/55DAP1.421080.626
62DAP/57DAP1.18061
68DAP/62DAP0.669730.118
68DAP/14DAP0.959491

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.115780.033

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.940620.591
Mature Green Tomato/Ripe Tomato1.081530.948
Immature Eggplant/Mature Eggplant1.089260.439
Ripe Pepper/Ripe Tomato0.676960.293
Mature Eggplant/Ripe Tomato1.677211

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.99017
1-1-2/M821.057711
12-2/M820.930720.955
12-4/M820.83441
1-3/M82N/AN/A
2-1-1/M820.737090.465
2-1/M820.84067
2-6/M820.8721
3-2/M821.19603
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M821.0167
4-3/M821.425011
5-3/M821.003511
6-2/M820.70463
6-3/M821.164571
7-1/M820.85027
7-2/M821.107970.385
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.100881
IL2-6/WTpooled1.132840.659
IL7-5/WTpooled1.01341
IL7-3/WTpooled1.099420.362
IL12-4/WTpooled0.93851
IL1-4/WTpooled1.022991
WT/WTpooled0.951671

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.164260.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.082840.921
DC3000/delta hrp 6h1.064881
DC3000/delta hrp 12h1.040681
DC3000/delta hrp 24h0.910350.403

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.165910.11
DC3000 delta B/DC3000 delta AB1.115220.389

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.021211
Exp 36h1.039421
Exp 60h0.917560.754

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.956461
Var 0h1.215340.98
Var 12h I row2-row11.3490.613
Var 12h NI row2-row11.334170.34
Var 36h I row2-row11.397050.742
Var 36h NI row2-row10.825670.61
Var 60h I row2-row10.829480.285
Var 60h NI row2-row10.847610.69
Time course 0hI-0hNI0.805210.089
Time course 12hI-12hNI1.089170.415
Time course 36hI-36hNI1.9080.012
Time course 60hI-60hNI1.523140.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.136860.264
transgenic ySAMdc/azygous control (breaker)1.076690.248
transgenic ySAMdc/azygous control (red)1.021421

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.004590.687

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.159570.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.914871
Manapal/WT (break)1.11061
Manapal/WT (red)1.314790.222