Expression of 1-1-2.3.6.12
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.82518 | 0.347 |
27DAP/17DAP | 0.99539 | 0.99 |
39DAP/27DAP | 1.19953 | 0.691 |
41DAP/39DAP | 0.83905 | 0.385 |
42DAP/41DAP | 1.26324 | 0.832 |
43DAP/42DAP | 0.9351 | 0.829 |
47DAP/43DAP | 0.86549 | 0.568 |
52DAP/47DAP | 1.01991 | 0.993 |
57DAP/52DAP | 1.17397 | 0.907 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.03187 | 0.846 |
17DAP/reference | 0.99482 | 0.777 |
27DAP/reference | 0.93877 | 0.095 |
39DAP/reference | 1.03028 | 0.747 |
41DAP/reference | 1.00303 | 0.963 |
42DAP/reference | 1.08354 | 0.08 |
43DAP/reference | 0.93469 | 0.273 |
47DAP/reference | 1.06577 | 0.154 |
52DAP/reference | 0.98928 | 0.515 |
57DAP/reference | 0.87611 | 0.016 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.99944 | 0.847 |
27DAP/17DAP | 0.91047 | 0.58 |
39DAP/27DAP | 1.03723 | 0.77 |
41DAP/39DAP | 0.98276 | 0.959 |
42DAP/41DAP | 1.01532 | 1 |
43DAP/42DAP | 0.95316 | 0.597 |
47DAP/43DAP | 1.03521 | 0.833 |
52DAP/47DAP | 0.9336 | 0.753 |
57DAP/52DAP | 1.05838 | 0.759 |
57DAP/7DAP | 1.02416 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.05988 | 0.664 |
17DAP/reference | 1.41291 | 0.269 |
27DAP/reference | 1.29664 | 0.664 |
39DAP/reference | 1.01013 | 1 |
41DAP/reference | 1.22831 | 0.389 |
42DAP/reference | 1.04149 | 1 |
43DAP/reference | 0.9652 | 0.421 |
47DAP/reference | 1.0106 | 1 |
52DAP/reference | 1.16511 | 0.139 |
57DAP/reference | 1.20468 | 0.158 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.11957 | 0.113 |
17DAP/reference | 1.11343 | 0.028 |
27DAP/reference | 1.12914 | 0.292 |
39DAP/reference | 1.19659 | 0.116 |
41DAP/reference | 1.07127 | 0.737 |
42DAP/reference | 1.0489 | 0.826 |
43DAP/reference | 1.13266 | 0.466 |
47DAP/reference | 0.96193 | 0.221 |
52DAP/reference | 1.08111 | 0.069 |
57DAP/reference | 1.08406 | 0.083 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00775 | 0.804 |
17DAP/reference | 0.95212 | 0.624 |
27DAP/reference | 1.30639 | 0.26 |
39DAP/reference | 1.10327 | 0.353 |
41DAP/reference | 1.62046 | 0.029 |
42DAP/reference | 1.18669 | 0.06 |
43DAP/reference | 1.34293 | 0.028 |
47DAP/reference | 1.066 | 0.089 |
52DAP/reference | 1.04448 | 0.801 |
57DAP/reference | 1.03185 | 0.673 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.0921 | 0.966 |
26DAP/20DAP | 2.30851 | 0.099 |
34DAP/26DAP | 0.80827 | 0.431 |
51DAP/34DAP | 0.68945 | 0.049 |
52DAP/51DAP | 1.17461 | 0.167 |
53DAP/52DAP | 0.97245 | 0.882 |
55DAP/53DAP | 0.87722 | 0.21 |
57DAP/55DAP | 1.42108 | 0.626 |
62DAP/57DAP | 1.18061 | |
68DAP/62DAP | 0.66973 | 0.118 |
68DAP/14DAP | 0.95949 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.11578 | 0.033 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.94062 | 0.591 |
Mature Green Tomato/Ripe Tomato | 1.08153 | 0.948 |
Immature Eggplant/Mature Eggplant | 1.08926 | 0.439 |
Ripe Pepper/Ripe Tomato | 0.67696 | 0.293 |
Mature Eggplant/Ripe Tomato | 1.67721 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.99017 | |
1-1-2/M82 | 1.05771 | 1 |
12-2/M82 | 0.93072 | 0.955 |
12-4/M82 | 0.8344 | 1 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | 0.73709 | 0.465 |
2-1/M82 | 0.84067 | |
2-6/M82 | 0.872 | 1 |
3-2/M82 | 1.19603 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 1.0167 | |
4-3/M82 | 1.42501 | 1 |
5-3/M82 | 1.00351 | 1 |
6-2/M82 | 0.70463 | |
6-3/M82 | 1.16457 | 1 |
7-1/M82 | 0.85027 | |
7-2/M82 | 1.10797 | 0.385 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.10088 | 1 |
IL2-6/WTpooled | 1.13284 | 0.659 |
IL7-5/WTpooled | 1.01341 | |
IL7-3/WTpooled | 1.09942 | 0.362 |
IL12-4/WTpooled | 0.9385 | 1 |
IL1-4/WTpooled | 1.02299 | 1 |
WT/WTpooled | 0.95167 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.16426 | 0.699 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.08284 | 0.921 |
DC3000/delta hrp 6h | 1.06488 | 1 |
DC3000/delta hrp 12h | 1.04068 | 1 |
DC3000/delta hrp 24h | 0.91035 | 0.403 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.16591 | 0.11 |
DC3000 delta B/DC3000 delta AB | 1.11522 | 0.389 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.02121 | 1 |
Exp 36h | 1.03942 | 1 |
Exp 60h | 0.91756 | 0.754 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.95646 | 1 |
Var 0h | 1.21534 | 0.98 |
Var 12h I row2-row1 | 1.349 | 0.613 |
Var 12h NI row2-row1 | 1.33417 | 0.34 |
Var 36h I row2-row1 | 1.39705 | 0.742 |
Var 36h NI row2-row1 | 0.82567 | 0.61 |
Var 60h I row2-row1 | 0.82948 | 0.285 |
Var 60h NI row2-row1 | 0.84761 | 0.69 |
Time course 0hI-0hNI | 0.80521 | 0.089 |
Time course 12hI-12hNI | 1.08917 | 0.415 |
Time course 36hI-36hNI | 1.908 | 0.012 |
Time course 60hI-60hNI | 1.52314 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.13686 | 0.264 |
transgenic ySAMdc/azygous control (breaker) | 1.07669 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.02142 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.00459 | 0.687 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.15957 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.91487 | 1 |
Manapal/WT (break) | 1.1106 | 1 |
Manapal/WT (red) | 1.31479 | 0.222 |
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