Expression of 1-1-2.3.6.4

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.29320.452
27DAP/17DAP1.07610.877
39DAP/27DAP0.797960.421
41DAP/39DAP1.217970.238
42DAP/41DAP0.975281
43DAP/42DAP1.073381
47DAP/43DAP1.300470.429
52DAP/47DAP0.897360.695
57DAP/52DAP1.108910.946

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.525730.02
17DAP/reference1.227940.143
27DAP/reference0.921430.059
39DAP/reference0.873650.029
41DAP/reference0.898690.201
42DAP/reference0.823480.003
43DAP/reference0.946890.464
47DAP/reference0.72150.001
52DAP/reference0.789840.102
57DAP/reference0.753950.054

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.916650.299
27DAP/17DAP0.964080.878
39DAP/27DAP1.079410.603
41DAP/39DAP1.059610.921
42DAP/41DAP1.041960.879
43DAP/42DAP1.142090.324
47DAP/43DAP1.026930.95
52DAP/47DAP1.140140.593
57DAP/52DAP0.916750.391
57DAP/7DAP1.084761

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.430380.069
17DAP/reference1.461380.059
27DAP/reference1.220050.246
39DAP/reference1.108250.486
41DAP/reference1.338780.121
42DAP/reference1.16020.534
43DAP/reference1.076860.672
47DAP/reference1.454990.056
52DAP/reference1.215080.183
57DAP/reference1.173610.076

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.497950.06
17DAP/reference2.097760.008
27DAP/reference1.940830.017
39DAP/reference1.509350.013
41DAP/reference1.587370.014
42DAP/reference1.401870.032
43DAP/reference0.97740.569
47DAP/reference1.210240.029
52DAP/reference1.472130.006
57DAP/reference0.907850.226

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.101620.338
17DAP/reference1.245890.427
27DAP/reference1.34010.143
39DAP/reference1.132890.296
41DAP/reference1.020521
42DAP/reference0.956750.552
43DAP/reference0.947420.432
47DAP/reference0.628310.005
52DAP/reference0.843120.289
57DAP/reference0.500730.018

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.952790.733
26DAP/20DAP0.828920.512
34DAP/26DAP1.065521
51DAP/34DAP1.088570.637
52DAP/51DAP1.03350.965
53DAP/52DAP0.985050.917
55DAP/53DAP1.124270.527
57DAP/55DAP1.061630.841
62DAP/57DAP1.257040.678
68DAP/62DAP1.02160.962
68DAP/14DAP1.255950.594

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.97240.547

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper2.844230.058
Mature Green Tomato/Ripe Tomato0.92270.522
Immature Eggplant/Mature Eggplant0.683570.067
Ripe Pepper/Ripe Tomato0.954121
Mature Eggplant/Ripe Tomato5.424990.268

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.030381
1-1-2/M821.021291
12-2/M821.74674
12-4/M820.63134
1-3/M820.825610.378
2-1-1/M821.035061
2-1/M82N/AN/A
2-6/M821.042861
3-2/M82N/AN/A
4-1-1/M820.738661
4-1/M820.908811
4-3-2/M820.786360.698
4-3/M820.76749
5-3/M820.919281
6-2/M820.79415
6-3/M821.1517
7-1/M820.84957
7-2/M821.000721
9-3-2/M820.875710.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.156640.46
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.093761
IL12-4/WTpooled0.570620.566
IL1-4/WTpooled1.049661
WT/WTpooled0.88751

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.234670.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.012370.921
DC3000/delta hrp 6h0.898080.95
DC3000/delta hrp 12h0.888821
DC3000/delta hrp 24h1.060990.655

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB1.126410.586

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.848241
Exp 36h1.378591
Exp 60h0.834070.664

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.95331
Var 0h0.888010.933
Var 12h I row2-row11.049070.58
Var 12h NI row2-row10.796390.394
Var 36h I row2-row10.849290.805
Var 36h NI row2-row11.08911
Var 60h I row2-row11.352170.562
Var 60h NI row2-row11.302070.904
Time course 0hI-0hNI1.024960.852
Time course 12hI-12hNI1.039540.743
Time course 36hI-36hNI0.93320.134
Time course 60hI-60hNI0.98080.646

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.048540.863
transgenic ySAMdc/azygous control (breaker)0.293560.118
transgenic ySAMdc/azygous control (red)1.269061

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.049630.334

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.431180.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.192020.307
Manapal/WT (break)1.414570.381
Manapal/WT (red)1.321271