Expression of 1-1-2.3.6.4
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.2932 | 0.452 |
27DAP/17DAP | 1.0761 | 0.877 |
39DAP/27DAP | 0.79796 | 0.421 |
41DAP/39DAP | 1.21797 | 0.238 |
42DAP/41DAP | 0.97528 | 1 |
43DAP/42DAP | 1.07338 | 1 |
47DAP/43DAP | 1.30047 | 0.429 |
52DAP/47DAP | 0.89736 | 0.695 |
57DAP/52DAP | 1.10891 | 0.946 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.52573 | 0.02 |
17DAP/reference | 1.22794 | 0.143 |
27DAP/reference | 0.92143 | 0.059 |
39DAP/reference | 0.87365 | 0.029 |
41DAP/reference | 0.89869 | 0.201 |
42DAP/reference | 0.82348 | 0.003 |
43DAP/reference | 0.94689 | 0.464 |
47DAP/reference | 0.7215 | 0.001 |
52DAP/reference | 0.78984 | 0.102 |
57DAP/reference | 0.75395 | 0.054 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.91665 | 0.299 |
27DAP/17DAP | 0.96408 | 0.878 |
39DAP/27DAP | 1.07941 | 0.603 |
41DAP/39DAP | 1.05961 | 0.921 |
42DAP/41DAP | 1.04196 | 0.879 |
43DAP/42DAP | 1.14209 | 0.324 |
47DAP/43DAP | 1.02693 | 0.95 |
52DAP/47DAP | 1.14014 | 0.593 |
57DAP/52DAP | 0.91675 | 0.391 |
57DAP/7DAP | 1.08476 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.43038 | 0.069 |
17DAP/reference | 1.46138 | 0.059 |
27DAP/reference | 1.22005 | 0.246 |
39DAP/reference | 1.10825 | 0.486 |
41DAP/reference | 1.33878 | 0.121 |
42DAP/reference | 1.1602 | 0.534 |
43DAP/reference | 1.07686 | 0.672 |
47DAP/reference | 1.45499 | 0.056 |
52DAP/reference | 1.21508 | 0.183 |
57DAP/reference | 1.17361 | 0.076 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.49795 | 0.06 |
17DAP/reference | 2.09776 | 0.008 |
27DAP/reference | 1.94083 | 0.017 |
39DAP/reference | 1.50935 | 0.013 |
41DAP/reference | 1.58737 | 0.014 |
42DAP/reference | 1.40187 | 0.032 |
43DAP/reference | 0.9774 | 0.569 |
47DAP/reference | 1.21024 | 0.029 |
52DAP/reference | 1.47213 | 0.006 |
57DAP/reference | 0.90785 | 0.226 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.10162 | 0.338 |
17DAP/reference | 1.24589 | 0.427 |
27DAP/reference | 1.3401 | 0.143 |
39DAP/reference | 1.13289 | 0.296 |
41DAP/reference | 1.02052 | 1 |
42DAP/reference | 0.95675 | 0.552 |
43DAP/reference | 0.94742 | 0.432 |
47DAP/reference | 0.62831 | 0.005 |
52DAP/reference | 0.84312 | 0.289 |
57DAP/reference | 0.50073 | 0.018 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.95279 | 0.733 |
26DAP/20DAP | 0.82892 | 0.512 |
34DAP/26DAP | 1.06552 | 1 |
51DAP/34DAP | 1.08857 | 0.637 |
52DAP/51DAP | 1.0335 | 0.965 |
53DAP/52DAP | 0.98505 | 0.917 |
55DAP/53DAP | 1.12427 | 0.527 |
57DAP/55DAP | 1.06163 | 0.841 |
62DAP/57DAP | 1.25704 | 0.678 |
68DAP/62DAP | 1.0216 | 0.962 |
68DAP/14DAP | 1.25595 | 0.594 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.9724 | 0.547 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 2.84423 | 0.058 |
Mature Green Tomato/Ripe Tomato | 0.9227 | 0.522 |
Immature Eggplant/Mature Eggplant | 0.68357 | 0.067 |
Ripe Pepper/Ripe Tomato | 0.95412 | 1 |
Mature Eggplant/Ripe Tomato | 5.42499 | 0.268 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.03038 | 1 |
1-1-2/M82 | 1.02129 | 1 |
12-2/M82 | 1.74674 | |
12-4/M82 | 0.63134 | |
1-3/M82 | 0.82561 | 0.378 |
2-1-1/M82 | 1.03506 | 1 |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.04286 | 1 |
3-2/M82 | N/A | N/A |
4-1-1/M82 | 0.73866 | 1 |
4-1/M82 | 0.90881 | 1 |
4-3-2/M82 | 0.78636 | 0.698 |
4-3/M82 | 0.76749 | |
5-3/M82 | 0.91928 | 1 |
6-2/M82 | 0.79415 | |
6-3/M82 | 1.1517 | |
7-1/M82 | 0.84957 | |
7-2/M82 | 1.00072 | 1 |
9-3-2/M82 | 0.87571 | 0.355 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.15664 | 0.46 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.09376 | 1 |
IL12-4/WTpooled | 0.57062 | 0.566 |
IL1-4/WTpooled | 1.04966 | 1 |
WT/WTpooled | 0.8875 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.23467 | 0.699 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.01237 | 0.921 |
DC3000/delta hrp 6h | 0.89808 | 0.95 |
DC3000/delta hrp 12h | 0.88882 | 1 |
DC3000/delta hrp 24h | 1.06099 | 0.655 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 1.12641 | 0.586 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.84824 | 1 |
Exp 36h | 1.37859 | 1 |
Exp 60h | 0.83407 | 0.664 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.9533 | 1 |
Var 0h | 0.88801 | 0.933 |
Var 12h I row2-row1 | 1.04907 | 0.58 |
Var 12h NI row2-row1 | 0.79639 | 0.394 |
Var 36h I row2-row1 | 0.84929 | 0.805 |
Var 36h NI row2-row1 | 1.0891 | 1 |
Var 60h I row2-row1 | 1.35217 | 0.562 |
Var 60h NI row2-row1 | 1.30207 | 0.904 |
Time course 0hI-0hNI | 1.02496 | 0.852 |
Time course 12hI-12hNI | 1.03954 | 0.743 |
Time course 36hI-36hNI | 0.9332 | 0.134 |
Time course 60hI-60hNI | 0.9808 | 0.646 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.04854 | 0.863 |
transgenic ySAMdc/azygous control (breaker) | 0.29356 | 0.118 |
transgenic ySAMdc/azygous control (red) | 1.26906 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.04963 | 0.334 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.43118 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.19202 | 0.307 |
Manapal/WT (break) | 1.41457 | 0.381 |
Manapal/WT (red) | 1.32127 | 1 |
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