Expression of 1-1-2.3.7.20
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.83103 | 0.26 |
27DAP/17DAP | 0.99717 | 1 |
39DAP/27DAP | 0.9512 | 0.67 |
41DAP/39DAP | 1.17993 | 0.676 |
42DAP/41DAP | 1.01188 | 1 |
43DAP/42DAP | 0.88469 | 0.761 |
47DAP/43DAP | 1.12189 | 0.542 |
52DAP/47DAP | 0.97649 | 0.746 |
57DAP/52DAP | 1.4273 | 0.817 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.95817 | 0.455 |
17DAP/reference | 0.96801 | 0.664 |
27DAP/reference | 1.05039 | 0.569 |
39DAP/reference | 1.01742 | 0.706 |
41DAP/reference | 1.04711 | 0.48 |
42DAP/reference | 0.89431 | 0.059 |
43DAP/reference | 1.0048 | 0.924 |
47DAP/reference | 1.01612 | 1 |
52DAP/reference | 0.84856 | 0.062 |
57DAP/reference | 0.91309 | 0.106 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.18521 | 0.414 |
27DAP/17DAP | 0.92347 | 0.648 |
39DAP/27DAP | 0.93704 | 0.639 |
41DAP/39DAP | 0.88474 | 0.617 |
42DAP/41DAP | 1.09742 | 0.687 |
43DAP/42DAP | 1.13479 | 0.162 |
47DAP/43DAP | 1.03884 | 0.779 |
52DAP/47DAP | 1.05008 | 0.819 |
57DAP/52DAP | 1.24729 | 0.333 |
57DAP/7DAP | 1.58143 | 0.204 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.83062 | 0.138 |
17DAP/reference | 0.98277 | 0.518 |
27DAP/reference | 0.90925 | 0.045 |
39DAP/reference | 0.92116 | 0.146 |
41DAP/reference | 0.8993 | 0.259 |
42DAP/reference | 1.04983 | 0.889 |
43DAP/reference | 0.91414 | 0.292 |
47DAP/reference | 1.08658 | 0.761 |
52DAP/reference | 0.92296 | 0.254 |
57DAP/reference | 0.90726 | 0.27 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.0306 | 0.993 |
17DAP/reference | 0.949 | 0.269 |
27DAP/reference | 0.96607 | 0.467 |
39DAP/reference | 0.9415 | 0.404 |
41DAP/reference | 0.84013 | 0.045 |
42DAP/reference | 1.02526 | 1 |
43DAP/reference | 1.35577 | 0.279 |
47DAP/reference | 1.08853 | 0.098 |
52DAP/reference | 0.89435 | 0.239 |
57DAP/reference | 1.10609 | 0.494 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.09738 | 0.386 |
17DAP/reference | 1.14573 | 0.384 |
27DAP/reference | 1.00069 | 0.805 |
39DAP/reference | 1.00249 | 0.755 |
41DAP/reference | 1.24069 | 0.023 |
42DAP/reference | 1.06261 | 0.836 |
43DAP/reference | 1.02563 | 1 |
47DAP/reference | 1.24987 | 0.179 |
52DAP/reference | 0.88769 | 0.296 |
57DAP/reference | 0.93226 | 0.38 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.98788 | 1 |
26DAP/20DAP | 0.98725 | 1 |
34DAP/26DAP | 1.15671 | 1 |
51DAP/34DAP | 1.08476 | 0.719 |
52DAP/51DAP | 1.23258 | 0.096 |
53DAP/52DAP | 1.15544 | 0.678 |
55DAP/53DAP | 1.10016 | 1 |
57DAP/55DAP | 0.93859 | 0.709 |
62DAP/57DAP | 1.00136 | 1 |
68DAP/62DAP | 1.2014 | 0.242 |
68DAP/14DAP | 1.45597 | 0.578 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.116 | 0.527 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.70011 | 0.033 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | 1.50062 | 0.268 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.04759 | 1 |
1-1-2/M82 | 1.23144 | 1 |
12-2/M82 | 1.24798 | 1 |
12-4/M82 | 1.13585 | 1 |
1-3/M82 | 1.14311 | 0.479 |
2-1-1/M82 | 1.0759 | 1 |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.96106 | 1 |
3-2/M82 | N/A | N/A |
4-1-1/M82 | 1.13422 | 0.977 |
4-1/M82 | 1.40287 | |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 1.55038 | 1 |
5-3/M82 | 1.15504 | 0.455 |
6-2/M82 | 0.95661 | |
6-3/M82 | 1.17522 | |
7-1/M82 | N/A | N/A |
7-2/M82 | 0.8601 | 0.599 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.72745 | 1 |
IL2-6/WTpooled | 1.03158 | 0.584 |
IL7-5/WTpooled | 1.66175 | |
IL7-3/WTpooled | 1.06344 | 1 |
IL12-4/WTpooled | 1.21942 | 0.532 |
IL1-4/WTpooled | 0.89815 | |
WT/WTpooled | 0.99176 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.00726 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.09732 | 0.715 |
DC3000/delta hrp 6h | 0.91095 | 0.95 |
DC3000/delta hrp 12h | 1.00892 | 1 |
DC3000/delta hrp 24h | 1.02936 | 0.743 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.08759 | 1 |
Var 0h | 0.98489 | 1 |
Var 12h I row2-row1 | 1.14181 | 0.443 |
Var 12h NI row2-row1 | 0.96895 | 0.713 |
Var 36h I row2-row1 | 0.79156 | 0.805 |
Var 36h NI row2-row1 | 1.01945 | 1 |
Var 60h I row2-row1 | 1.08304 | 0.543 |
Var 60h NI row2-row1 | 1.00052 | 1 |
Time course 0hI-0hNI | 1.02797 | 0.852 |
Time course 12hI-12hNI | 1.01338 | 0.833 |
Time course 36hI-36hNI | 1.10924 | 0.28 |
Time course 60hI-60hNI | 1.03554 | 0.575 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 2.54079 | 0.921 |
transgenic ySAMdc/azygous control (breaker) | 0.69516 | 1 |
transgenic ySAMdc/azygous control (red) | N/A | N/A |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.98755 | 0.486 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.42941 | 0.239 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | N/A | N/A |
Manapal/WT (red) | 0.83989 | 0.181 |
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