Expression of 1-1-2.3.9.21
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.10962 | 0.863 |
27DAP/17DAP | 1.64016 | 0.408 |
39DAP/27DAP | 0.82654 | 0.512 |
41DAP/39DAP | 1.24021 | 0.722 |
42DAP/41DAP | 1.168 | 0.978 |
43DAP/42DAP | 1.29611 | 0.728 |
47DAP/43DAP | 0.97713 | 0.879 |
52DAP/47DAP | 1.22513 | 0.601 |
57DAP/52DAP | 0.8245 | 0.845 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.08311 | 0.71 |
17DAP/reference | 1.18152 | 0.044 |
27DAP/reference | 1.11249 | 0.384 |
39DAP/reference | 1.09553 | 0.359 |
41DAP/reference | 1.21463 | 0.133 |
42DAP/reference | 0.98081 | 0.398 |
43DAP/reference | 1.01647 | 0.982 |
47DAP/reference | 0.93988 | 0.224 |
52DAP/reference | 0.97174 | 0.461 |
57DAP/reference | 0.9113 | 0.106 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.12189 | 0.398 |
27DAP/17DAP | 1.09114 | 0.751 |
39DAP/27DAP | 0.88424 | 0.322 |
41DAP/39DAP | 1.11762 | 0.484 |
42DAP/41DAP | 0.89042 | 0.315 |
43DAP/42DAP | 0.93359 | 0.597 |
47DAP/43DAP | 1.05475 | 0.817 |
52DAP/47DAP | 1.05266 | 0.856 |
57DAP/52DAP | 0.94312 | 0.605 |
57DAP/7DAP | 0.82018 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.30818 | 0.078 |
17DAP/reference | 1.27171 | 0.054 |
27DAP/reference | 1.24109 | 0.131 |
39DAP/reference | 1.0724 | 0.282 |
41DAP/reference | 1.25385 | 0.46 |
42DAP/reference | 1.41328 | 0.132 |
43DAP/reference | 1.3171 | 0.006 |
47DAP/reference | 1.09371 | 0.67 |
52DAP/reference | 1.06567 | 0.832 |
57DAP/reference | 1.30612 | 0.076 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.13757 | 0.269 |
17DAP/reference | 1.21318 | 0.338 |
27DAP/reference | 1.09136 | 0.888 |
39DAP/reference | 1.00135 | 0.586 |
41DAP/reference | 1.0691 | 0.599 |
42DAP/reference | 0.84775 | 0.03 |
43DAP/reference | 1.26729 | 0.199 |
47DAP/reference | 1.08398 | 0.332 |
52DAP/reference | 1.13311 | 0.498 |
57DAP/reference | 1.21151 | 0.146 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.2995 | 0.021 |
17DAP/reference | 1.16556 | 0.443 |
27DAP/reference | 1.46754 | 0.016 |
39DAP/reference | 1.38511 | 0.01 |
41DAP/reference | 1.0461 | 1 |
42DAP/reference | 1.1823 | 0.589 |
43DAP/reference | 1.10684 | 0.721 |
47DAP/reference | 1.07098 | 0.519 |
52DAP/reference | 2.96345 | 0.262 |
57DAP/reference | 0.80782 | 0.138 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.16851 | 0.966 |
26DAP/20DAP | 0.93206 | 1 |
34DAP/26DAP | 0.98991 | 1 |
51DAP/34DAP | 1.39157 | 0.496 |
52DAP/51DAP | 0.99619 | 1 |
53DAP/52DAP | 1.26234 | 0.819 |
55DAP/53DAP | 1.06098 | 1 |
57DAP/55DAP | 0.9881 | 0.875 |
62DAP/57DAP | 1.13078 | 0.767 |
68DAP/62DAP | 0.6985 | 0.211 |
68DAP/14DAP | 0.71937 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.12924 | 0.439 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.52002 | 0.478 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 1.00632 | |
Mature Eggplant/Ripe Tomato | 2.09646 | 0.268 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.00116 | 1 |
1-1-2/M82 | 0.95179 | 1 |
12-2/M82 | 1.02572 | 1 |
12-4/M82 | 1.23087 | 0.611 |
1-3/M82 | 0.88675 | 0.501 |
2-1-1/M82 | 1.31665 | 0.764 |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.1112 | 0.594 |
3-2/M82 | 1.04986 | |
4-1-1/M82 | 0.99537 | 1 |
4-1/M82 | 0.95509 | |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 0.84286 | |
5-3/M82 | 1.19305 | 0.572 |
6-2/M82 | 0.98812 | 1 |
6-3/M82 | 0.95671 | 1 |
7-1/M82 | 1.05035 | |
7-2/M82 | 1.00284 | 1 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.89541 | 0.321 |
IL2-6/WTpooled | 1.10489 | 0.659 |
IL7-5/WTpooled | 1.15225 | 0.792 |
IL7-3/WTpooled | 1.03655 | 1 |
IL12-4/WTpooled | 0.77892 | 0.71 |
IL1-4/WTpooled | 0.82299 | 0.402 |
WT/WTpooled | 0.89737 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.77181 | 0.75 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.93695 | 1 |
DC3000/delta hrp 6h | 0.83667 | 0.95 |
DC3000/delta hrp 12h | 0.95253 | 1 |
DC3000/delta hrp 24h | 1.11251 | 0.516 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.05976 | |
Var 0h | 0.84819 | 0.933 |
Var 12h I row2-row1 | 0.99715 | 1 |
Var 12h NI row2-row1 | 1.34705 | 0.649 |
Var 36h I row2-row1 | 0.87304 | 1 |
Var 36h NI row2-row1 | 0.74654 | 0.584 |
Var 60h I row2-row1 | 1.02546 | 1 |
Var 60h NI row2-row1 | 0.94947 | 0.866 |
Time course 0hI-0hNI | 1.12157 | 0.603 |
Time course 12hI-12hNI | 1.00432 | 1 |
Time course 36hI-36hNI | 1.20884 | 0.031 |
Time course 60hI-60hNI | 1.2244 | 0.053 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.98711 | 0.862 |
transgenic ySAMdc/azygous control (breaker) | 0.78421 | 0.15 |
transgenic ySAMdc/azygous control (red) | 0.93998 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.94676 | 0.072 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.77301 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | 0.80935 | 0.333 |
Manapal/WT (red) | 1.42815 | 0.413 |
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