Expression of 1-1-2.3.9.21

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.109620.863
27DAP/17DAP1.640160.408
39DAP/27DAP0.826540.512
41DAP/39DAP1.240210.722
42DAP/41DAP1.1680.978
43DAP/42DAP1.296110.728
47DAP/43DAP0.977130.879
52DAP/47DAP1.225130.601
57DAP/52DAP0.82450.845

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.083110.71
17DAP/reference1.181520.044
27DAP/reference1.112490.384
39DAP/reference1.095530.359
41DAP/reference1.214630.133
42DAP/reference0.980810.398
43DAP/reference1.016470.982
47DAP/reference0.939880.224
52DAP/reference0.971740.461
57DAP/reference0.91130.106

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.121890.398
27DAP/17DAP1.091140.751
39DAP/27DAP0.884240.322
41DAP/39DAP1.117620.484
42DAP/41DAP0.890420.315
43DAP/42DAP0.933590.597
47DAP/43DAP1.054750.817
52DAP/47DAP1.052660.856
57DAP/52DAP0.943120.605
57DAP/7DAP0.820181

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.308180.078
17DAP/reference1.271710.054
27DAP/reference1.241090.131
39DAP/reference1.07240.282
41DAP/reference1.253850.46
42DAP/reference1.413280.132
43DAP/reference1.31710.006
47DAP/reference1.093710.67
52DAP/reference1.065670.832
57DAP/reference1.306120.076

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.137570.269
17DAP/reference1.213180.338
27DAP/reference1.091360.888
39DAP/reference1.001350.586
41DAP/reference1.06910.599
42DAP/reference0.847750.03
43DAP/reference1.267290.199
47DAP/reference1.083980.332
52DAP/reference1.133110.498
57DAP/reference1.211510.146

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.29950.021
17DAP/reference1.165560.443
27DAP/reference1.467540.016
39DAP/reference1.385110.01
41DAP/reference1.04611
42DAP/reference1.18230.589
43DAP/reference1.106840.721
47DAP/reference1.070980.519
52DAP/reference2.963450.262
57DAP/reference0.807820.138

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.168510.966
26DAP/20DAP0.932061
34DAP/26DAP0.989911
51DAP/34DAP1.391570.496
52DAP/51DAP0.996191
53DAP/52DAP1.262340.819
55DAP/53DAP1.060981
57DAP/55DAP0.98810.875
62DAP/57DAP1.130780.767
68DAP/62DAP0.69850.211
68DAP/14DAP0.719370.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.129240.439

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.520020.478
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato1.00632
Mature Eggplant/Ripe Tomato2.096460.268

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.001161
1-1-2/M820.951791
12-2/M821.025721
12-4/M821.230870.611
1-3/M820.886750.501
2-1-1/M821.316650.764
2-1/M82N/AN/A
2-6/M821.11120.594
3-2/M821.04986
4-1-1/M820.995371
4-1/M820.95509
4-3-2/M82N/AN/A
4-3/M820.84286
5-3/M821.193050.572
6-2/M820.988121
6-3/M820.956711
7-1/M821.05035
7-2/M821.002841
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.895410.321
IL2-6/WTpooled1.104890.659
IL7-5/WTpooled1.152250.792
IL7-3/WTpooled1.036551
IL12-4/WTpooled0.778920.71
IL1-4/WTpooled0.822990.402
WT/WTpooled0.897371

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.771810.75

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.936951
DC3000/delta hrp 6h0.836670.95
DC3000/delta hrp 12h0.952531
DC3000/delta hrp 24h1.112510.516

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.05976
Var 0h0.848190.933
Var 12h I row2-row10.997151
Var 12h NI row2-row11.347050.649
Var 36h I row2-row10.873041
Var 36h NI row2-row10.746540.584
Var 60h I row2-row11.025461
Var 60h NI row2-row10.949470.866
Time course 0hI-0hNI1.121570.603
Time course 12hI-12hNI1.004321
Time course 36hI-36hNI1.208840.031
Time course 60hI-60hNI1.22440.053

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.987110.862
transgenic ySAMdc/azygous control (breaker)0.784210.15
transgenic ySAMdc/azygous control (red)0.939981

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.946760.072

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.773010.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)0.809350.333
Manapal/WT (red)1.428150.413