Expression of 1-1-2.3.9.6
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.00792 | 0.911 |
27DAP/17DAP | 1.58736 | 0.521 |
39DAP/27DAP | 1.389 | 0.181 |
41DAP/39DAP | 0.88205 | 0.501 |
42DAP/41DAP | 1.06809 | 0.941 |
43DAP/42DAP | 1.00115 | 0.932 |
47DAP/43DAP | 0.87747 | 0.599 |
52DAP/47DAP | 0.83081 | 0.607 |
57DAP/52DAP | 1.24084 | 0.912 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.18575 | 0.059 |
17DAP/reference | 1.16807 | 0.041 |
27DAP/reference | 1.00486 | 1 |
39DAP/reference | 1.10584 | 0.14 |
41DAP/reference | 1.2713 | 0.122 |
42DAP/reference | 1.12647 | 0.119 |
43DAP/reference | 1.12434 | 0.445 |
47DAP/reference | 1.16205 | 0.016 |
52DAP/reference | 0.78517 | 0.019 |
57DAP/reference | 0.9451 | 0.235 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.30033 | 0.151 |
27DAP/17DAP | 1.06734 | 0.915 |
39DAP/27DAP | 1.27346 | 0.496 |
41DAP/39DAP | 0.96644 | 0.934 |
42DAP/41DAP | 1.05453 | 0.861 |
43DAP/42DAP | 1.09784 | 0.297 |
47DAP/43DAP | 0.96667 | 0.823 |
52DAP/47DAP | 0.81075 | 0.23 |
57DAP/52DAP | 0.97717 | 0.789 |
57DAP/7DAP | 1.3002 | 0.365 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.52034 | 0.027 |
17DAP/reference | 1.56201 | 0.006 |
27DAP/reference | 1.51035 | 0.014 |
39DAP/reference | 1.42637 | 0.009 |
41DAP/reference | 1.2533 | 0.101 |
42DAP/reference | 1.29262 | 0.037 |
43DAP/reference | 1.29654 | 0.022 |
47DAP/reference | 1.44529 | 0.015 |
52DAP/reference | 1.32213 | 0.021 |
57DAP/reference | 1.41536 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.16367 | 0.19 |
17DAP/reference | 1.37495 | 0.008 |
27DAP/reference | 1.2501 | 0.04 |
39DAP/reference | 0.98506 | 0.539 |
41DAP/reference | 0.97393 | 0.432 |
42DAP/reference | 1.00966 | 1 |
43DAP/reference | 1.06023 | 1 |
47DAP/reference | 1.19298 | 0.074 |
52DAP/reference | 1.05748 | 1 |
57DAP/reference | 1.04561 | 1 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.45694 | 0.025 |
17DAP/reference | 1.18622 | 0.129 |
27DAP/reference | 1.26596 | 0.078 |
39DAP/reference | 1.35911 | 0.038 |
41DAP/reference | 1.14328 | 0.439 |
42DAP/reference | 1.03681 | 1 |
43DAP/reference | 1.08039 | 0.655 |
47DAP/reference | 0.99723 | 0.708 |
52DAP/reference | 1.72913 | 0.035 |
57DAP/reference | 0.90004 | 0.217 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.94603 | 1 |
26DAP/20DAP | 2.76793 | 0.093 |
34DAP/26DAP | 1.61355 | 0.19 |
51DAP/34DAP | 0.80783 | 0.587 |
52DAP/51DAP | 0.89681 | 1 |
53DAP/52DAP | 0.88282 | 0.631 |
55DAP/53DAP | 0.64124 | 0.024 |
57DAP/55DAP | 0.84724 | 0.351 |
62DAP/57DAP | 1.37976 | 0.723 |
68DAP/62DAP | 0.82957 | 0.641 |
68DAP/14DAP | 0.73885 | 0.086 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.60024 | 0.065 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.59946 | 0.181 |
Mature Green Tomato/Ripe Tomato | 1.22382 | 0.752 |
Immature Eggplant/Mature Eggplant | 1.21717 | 0.081 |
Ripe Pepper/Ripe Tomato | 0.66456 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.7852 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.02657 | 1 |
1-1-2/M82 | 1.06719 | 1 |
12-2/M82 | 0.70857 | 0.862 |
12-4/M82 | 1.03314 | 1 |
1-3/M82 | 1.38932 | 0.479 |
2-1-1/M82 | 1.21127 | 0.457 |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.93381 | |
3-2/M82 | N/A | N/A |
4-1-1/M82 | 1.15471 | |
4-1/M82 | 0.93408 | |
4-3-2/M82 | 1.34183 | 1 |
4-3/M82 | 1.22945 | 1 |
5-3/M82 | 1.15992 | 1 |
6-2/M82 | 1.32032 | 1 |
6-3/M82 | 0.83591 | |
7-1/M82 | 1.04121 | |
7-2/M82 | 1.0838 | 0.385 |
9-3-2/M82 | 1.33409 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.83382 | 0.473 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.4489 | 1 |
IL12-4/WTpooled | 0.99639 | 1 |
IL1-4/WTpooled | 1.05147 | |
WT/WTpooled | 1.00491 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.84806 | 0.479 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.00111 | 1 |
DC3000/delta hrp 6h | 0.97001 | 0.95 |
DC3000/delta hrp 12h | 0.97072 | 1 |
DC3000/delta hrp 24h | 1.49775 | 0.074 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.21299 | 0.045 |
DC3000 delta B/DC3000 delta AB | 1.32112 | 0.139 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.75395 | 1 |
Exp 36h | 1.10671 | 0.489 |
Exp 60h | 1.04048 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00777 | 1 |
Var 0h | 0.421 | 0.332 |
Var 12h I row2-row1 | 0.81929 | 0.363 |
Var 12h NI row2-row1 | 1.46367 | 0.281 |
Var 36h I row2-row1 | 0.93983 | 1 |
Var 36h NI row2-row1 | 0.64427 | 0.478 |
Var 60h I row2-row1 | 0.66588 | 0.285 |
Var 60h NI row2-row1 | 0.69082 | 0.335 |
Time course 0hI-0hNI | 1.05799 | 0.852 |
Time course 12hI-12hNI | 1.14165 | 0.445 |
Time course 36hI-36hNI | 2.14976 | 0.005 |
Time course 60hI-60hNI | 13.5014 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.95708 | 0.32 |
transgenic ySAMdc/azygous control (breaker) | 1.03268 | 1 |
transgenic ySAMdc/azygous control (red) | 1.02696 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.0016 | 0.958 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.64195 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.76833 | 0.172 |
Manapal/WT (break) | 0.85131 | 0.299 |
Manapal/WT (red) | 1.28073 | 0.222 |
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