Expression of 1-1-2.3.9.7

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.172710.709
27DAP/17DAP0.883270.72
39DAP/27DAP0.923710.62
41DAP/39DAP1.45910.276
42DAP/41DAP1.149541
43DAP/42DAP0.948050.877
47DAP/43DAP0.946010.754
52DAP/47DAP1.440950.351
57DAP/52DAP0.762590.646

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.034411
17DAP/reference1.040570.399
27DAP/reference0.941550.275
39DAP/reference0.95610.446
41DAP/reference1.063830.714
42DAP/reference0.909850.075
43DAP/reference1.151380.021
47DAP/reference0.82930.004
52DAP/reference0.702140.053
57DAP/reference0.702160.027

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.963430.644
27DAP/17DAP0.969670.887
39DAP/27DAP1.047050.677
41DAP/39DAP0.946950.893
42DAP/41DAP0.991630.823
43DAP/42DAP1.062650.585
47DAP/43DAP1.044880.934
52DAP/47DAP1.007791
57DAP/52DAP1.064760.67
57DAP/7DAP0.961271

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.815350.082
17DAP/reference0.845950.031
27DAP/reference1.045530.551
39DAP/reference0.87120.018
41DAP/reference0.834520.047
42DAP/reference1.037720.686
43DAP/reference0.824390.061
47DAP/reference0.858790.222
52DAP/reference0.869670.126
57DAP/reference0.888280.077

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.016580.903
17DAP/reference1.109420.063
27DAP/reference0.95710.519
39DAP/reference0.846490.108
41DAP/reference0.818180.078
42DAP/reference0.916080.289
43DAP/reference1.241190.117
47DAP/reference1.022070.695
52DAP/reference1.037540.789
57DAP/reference1.331050.177

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.882680.135
17DAP/reference0.957490.571
27DAP/reference0.848240.089
39DAP/reference0.868240.019
41DAP/reference0.878330.024
42DAP/reference0.936130.552
43DAP/reference0.763840.11
47DAP/reference1.05061
52DAP/reference0.955450.582
57DAP/reference0.563590.062

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.021241
26DAP/20DAP0.83740.512
34DAP/26DAP0.981420.98
51DAP/34DAP0.881140.492
52DAP/51DAP1.298930.094
53DAP/52DAP1.013180.921
55DAP/53DAP1.204510.043
57DAP/55DAP0.808780.249
62DAP/57DAP1.298760.115
68DAP/62DAP0.919840.641
68DAP/14DAP0.70610.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.915730.358

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.623960.752
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.2147
Mature Eggplant/Ripe Tomato0.491570.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.168310.877
1-1-2/M820.889741
12-2/M82N/AN/A
12-4/M820.975161
1-3/M820.91709
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M821.0041
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M820.842741
4-3-2/M820.8292
4-3/M82N/AN/A
5-3/M820.956231
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M820.71530.553
9-3-2/M820.69681

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.410950.277
IL2-6/WTpooled0.496950.348
IL7-5/WTpooled1.132530.67
IL7-3/WTpooled1.25631
IL12-4/WTpooled1.364810.595
IL1-4/WTpooled0.915750.834
WT/WTpooled0.996331

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.812890.497

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.037820.921
DC3000/delta hrp 6h1.222381
DC3000/delta hrp 12h1.417761
DC3000/delta hrp 24h0.85370.073

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.396750.068
DC3000 delta B/DC3000 delta AB0.775430.087

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36h0.637630.366
Exp 60h0.389230.257

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.933611
Var 0h0.468440.933
Var 12h I row2-row11.058010.654
Var 12h NI row2-row10.84940.488
Var 36h I row2-row10.847650.34
Var 36h NI row2-row11.045621
Var 60h I row2-row11.614780.562
Var 60h NI row2-row11.18980.904
Time course 0hI-0hNI1.089470.486
Time course 12hI-12hNI0.951670.476
Time course 36hI-36hNI0.74640.025
Time course 60hI-60hNI0.628990.026

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.677820.286
transgenic ySAMdc/azygous control (breaker)1.055551
transgenic ySAMdc/azygous control (red)1.217510.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.998050.806

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.569260.229

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.267070.307
Manapal/WT (break)0.845361
Manapal/WT (red)1.010651