Expression of 1-1-2.3.9.7
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.17271 | 0.709 |
27DAP/17DAP | 0.88327 | 0.72 |
39DAP/27DAP | 0.92371 | 0.62 |
41DAP/39DAP | 1.4591 | 0.276 |
42DAP/41DAP | 1.14954 | 1 |
43DAP/42DAP | 0.94805 | 0.877 |
47DAP/43DAP | 0.94601 | 0.754 |
52DAP/47DAP | 1.44095 | 0.351 |
57DAP/52DAP | 0.76259 | 0.646 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.03441 | 1 |
17DAP/reference | 1.04057 | 0.399 |
27DAP/reference | 0.94155 | 0.275 |
39DAP/reference | 0.9561 | 0.446 |
41DAP/reference | 1.06383 | 0.714 |
42DAP/reference | 0.90985 | 0.075 |
43DAP/reference | 1.15138 | 0.021 |
47DAP/reference | 0.8293 | 0.004 |
52DAP/reference | 0.70214 | 0.053 |
57DAP/reference | 0.70216 | 0.027 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.96343 | 0.644 |
27DAP/17DAP | 0.96967 | 0.887 |
39DAP/27DAP | 1.04705 | 0.677 |
41DAP/39DAP | 0.94695 | 0.893 |
42DAP/41DAP | 0.99163 | 0.823 |
43DAP/42DAP | 1.06265 | 0.585 |
47DAP/43DAP | 1.04488 | 0.934 |
52DAP/47DAP | 1.00779 | 1 |
57DAP/52DAP | 1.06476 | 0.67 |
57DAP/7DAP | 0.96127 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.81535 | 0.082 |
17DAP/reference | 0.84595 | 0.031 |
27DAP/reference | 1.04553 | 0.551 |
39DAP/reference | 0.8712 | 0.018 |
41DAP/reference | 0.83452 | 0.047 |
42DAP/reference | 1.03772 | 0.686 |
43DAP/reference | 0.82439 | 0.061 |
47DAP/reference | 0.85879 | 0.222 |
52DAP/reference | 0.86967 | 0.126 |
57DAP/reference | 0.88828 | 0.077 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.01658 | 0.903 |
17DAP/reference | 1.10942 | 0.063 |
27DAP/reference | 0.9571 | 0.519 |
39DAP/reference | 0.84649 | 0.108 |
41DAP/reference | 0.81818 | 0.078 |
42DAP/reference | 0.91608 | 0.289 |
43DAP/reference | 1.24119 | 0.117 |
47DAP/reference | 1.02207 | 0.695 |
52DAP/reference | 1.03754 | 0.789 |
57DAP/reference | 1.33105 | 0.177 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.88268 | 0.135 |
17DAP/reference | 0.95749 | 0.571 |
27DAP/reference | 0.84824 | 0.089 |
39DAP/reference | 0.86824 | 0.019 |
41DAP/reference | 0.87833 | 0.024 |
42DAP/reference | 0.93613 | 0.552 |
43DAP/reference | 0.76384 | 0.11 |
47DAP/reference | 1.0506 | 1 |
52DAP/reference | 0.95545 | 0.582 |
57DAP/reference | 0.56359 | 0.062 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.02124 | 1 |
26DAP/20DAP | 0.8374 | 0.512 |
34DAP/26DAP | 0.98142 | 0.98 |
51DAP/34DAP | 0.88114 | 0.492 |
52DAP/51DAP | 1.29893 | 0.094 |
53DAP/52DAP | 1.01318 | 0.921 |
55DAP/53DAP | 1.20451 | 0.043 |
57DAP/55DAP | 0.80878 | 0.249 |
62DAP/57DAP | 1.29876 | 0.115 |
68DAP/62DAP | 0.91984 | 0.641 |
68DAP/14DAP | 0.7061 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.91573 | 0.358 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.62396 | 0.752 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.2147 | |
Mature Eggplant/Ripe Tomato | 0.49157 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.16831 | 0.877 |
1-1-2/M82 | 0.88974 | 1 |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.97516 | 1 |
1-3/M82 | 0.91709 | |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.0041 | |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 0.84274 | 1 |
4-3-2/M82 | 0.8292 | |
4-3/M82 | N/A | N/A |
5-3/M82 | 0.95623 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | 0.7153 | 0.553 |
9-3-2/M82 | 0.69681 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.41095 | 0.277 |
IL2-6/WTpooled | 0.49695 | 0.348 |
IL7-5/WTpooled | 1.13253 | 0.67 |
IL7-3/WTpooled | 1.2563 | 1 |
IL12-4/WTpooled | 1.36481 | 0.595 |
IL1-4/WTpooled | 0.91575 | 0.834 |
WT/WTpooled | 0.99633 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.81289 | 0.497 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.03782 | 0.921 |
DC3000/delta hrp 6h | 1.22238 | 1 |
DC3000/delta hrp 12h | 1.41776 | 1 |
DC3000/delta hrp 24h | 0.8537 | 0.073 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.39675 | 0.068 |
DC3000 delta B/DC3000 delta AB | 0.77543 | 0.087 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | 0.63763 | 0.366 |
Exp 60h | 0.38923 | 0.257 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.93361 | 1 |
Var 0h | 0.46844 | 0.933 |
Var 12h I row2-row1 | 1.05801 | 0.654 |
Var 12h NI row2-row1 | 0.8494 | 0.488 |
Var 36h I row2-row1 | 0.84765 | 0.34 |
Var 36h NI row2-row1 | 1.04562 | 1 |
Var 60h I row2-row1 | 1.61478 | 0.562 |
Var 60h NI row2-row1 | 1.1898 | 0.904 |
Time course 0hI-0hNI | 1.08947 | 0.486 |
Time course 12hI-12hNI | 0.95167 | 0.476 |
Time course 36hI-36hNI | 0.7464 | 0.025 |
Time course 60hI-60hNI | 0.62899 | 0.026 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.67782 | 0.286 |
transgenic ySAMdc/azygous control (breaker) | 1.05555 | 1 |
transgenic ySAMdc/azygous control (red) | 1.21751 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.99805 | 0.806 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.56926 | 0.229 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.26707 | 0.307 |
Manapal/WT (break) | 0.84536 | 1 |
Manapal/WT (red) | 1.01065 | 1 |
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