Tomato Functional Genomics Database (TFGD)

Expression of 1-1-2.4.1.10

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.08377	0.893
27DAP/17DAP	1.057	0.91
39DAP/27DAP	0.85007	0.544
41DAP/39DAP	1.29338	0.451
42DAP/41DAP	1.4598	0.507
43DAP/42DAP	0.93286	0.867
47DAP/43DAP	0.73993	0.263
52DAP/47DAP	1.66198	0.269
57DAP/52DAP	0.83819	0.8

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.92333	0.098
17DAP/reference	0.99889	1
27DAP/reference	1.09152	0.277
39DAP/reference	1.10686	0.256
41DAP/reference	1.00454	1
42DAP/reference	0.97789	0.295
43DAP/reference	1.2648	0.013
47DAP/reference	0.94868	0.207
52DAP/reference	0.96301	0.416
57DAP/reference	1.04919	0.802

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.95232	0.595
27DAP/17DAP	0.90664	0.537
39DAP/27DAP	1.06261	0.646
41DAP/39DAP	1.09606	0.895
42DAP/41DAP	1.02396	0.87
43DAP/42DAP	0.96387	0.641
47DAP/43DAP	1.06014	0.724
52DAP/47DAP	0.93511	0.763
57DAP/52DAP	0.92622	0.505
57DAP/7DAP	1.10707	1

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.7193	0.066
17DAP/reference	0.72252	0.012
27DAP/reference	0.78347	0.01
39DAP/reference	0.67813	0.011
41DAP/reference	0.64039	0.017
42DAP/reference	0.66162	0.01
43DAP/reference	0.5959	0.011
47DAP/reference	0.80866	0.128
52DAP/reference	0.58235	0.013
57DAP/reference	0.66972	0.007

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.13208	0.099
17DAP/reference	0.99737	0.766
27DAP/reference	0.94917	0.381
39DAP/reference	0.89314	0.147
41DAP/reference	0.89655	0.091
42DAP/reference	0.89581	0.039
43DAP/reference	1.18958	0.297
47DAP/reference	0.86734	0.025
52DAP/reference	1.07132	0.498
57DAP/reference	1.16754	0.02

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.80716	0.044
17DAP/reference	0.98007	0.668
27DAP/reference	0.70317	0.035
39DAP/reference	0.71371	0.019
41DAP/reference	0.87948	0.185
42DAP/reference	0.91551	0.361
43DAP/reference	0.95394	0.449
47DAP/reference	1.19799	0.023
52DAP/reference	0.8869	0.342
57DAP/reference	0.85252	0.109

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	1.00246	1
26DAP/20DAP	1.02319
34DAP/26DAP	0.9298	0.874
51DAP/34DAP	0.89838	0.508
52DAP/51DAP	1.29024	0.288
53DAP/52DAP	1.1017	0.806
55DAP/53DAP	1.14863	0.301
57DAP/55DAP	0.72698	0.101
62DAP/57DAP	1.22853	0.185
68DAP/62DAP	0.83483	0.29
68DAP/14DAP	1.03903	1

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	0.95712	0.493

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	1.63714	0.166
Immature Eggplant/Mature Eggplant	N/A	N/A
Ripe Pepper/Ripe Tomato	N/A	N/A
Mature Eggplant/Ripe Tomato	N/A	N/A

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	0.91725	0.944
1-1-2/M82	0.77373
12-2/M82	1.18623	0.61
12-4/M82	1.05704	1
1-3/M82	0.79454	0.441
2-1-1/M82	N/A	N/A
2-1/M82	N/A	N/A
2-6/M82	1.09796	0.505
3-2/M82	N/A	N/A
4-1-1/M82	0.88578	1
4-1/M82	1.49868
4-3-2/M82	1.1272
4-3/M82	1.22146	1
5-3/M82	0.93106	0.642
6-2/M82	0.88982	0.481
6-3/M82	1.05311	1
7-1/M82	N/A	N/A
7-2/M82	0.99843	1
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	0.90845	0.321
IL2-6/WTpooled	1.0137	1
IL7-5/WTpooled	0.94975	1
IL7-3/WTpooled	0.99104	1
IL12-4/WTpooled	0.99172	1
IL1-4/WTpooled	0.88969	0.834
WT/WTpooled	0.97427	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	0.86077	0.75

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	1.08658	0.921
DC3000/delta hrp 6h	1.07287	1
DC3000/delta hrp 12h	0.94587	1
DC3000/delta hrp 24h	0.85737	0.096

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	0.50248
DC3000 delta B/DC3000 delta AB	0.75483	0.172

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	1.07531	1
Exp 36h	0.99017	0.943
Exp 60h	0.81219	0.586

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	1.01191	1
Var 0h	2.20449	0.782
Var 12h I row2-row1	0.99875	1
Var 12h NI row2-row1	1.00847	1
Var 36h I row2-row1	0.87878	0.805
Var 36h NI row2-row1	2.43656	1
Var 60h I row2-row1	1.49489	0.562
Var 60h NI row2-row1	1.14354	0.904
Time course 0hI-0hNI	1.03382	0.574
Time course 12hI-12hNI	0.86488	0.112
Time course 36hI-36hNI	0.80013	0.028
Time course 60hI-60hNI	0.63785	0.015

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	0.94479	0.348
transgenic ySAMdc/azygous control (breaker)	1.07897	1
transgenic ySAMdc/azygous control (red)	0.96691	1

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	1.05077	0.148

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	0.98927	0.789

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	0.84098	1
Manapal/WT (break)	1.10066	1
Manapal/WT (red)	1.52021	0.164