Expression of 1-1-2.4.1.12

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.104460.786
27DAP/17DAP0.937270.889
39DAP/27DAP1.333820.307
41DAP/39DAP0.707490.083
42DAP/41DAP1.054430.978
43DAP/42DAP1.09411
47DAP/43DAP0.838050.484
52DAP/47DAP1.020490.984
57DAP/52DAP1.233720.694

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.44440.011
17DAP/reference1.277970.059
27DAP/reference1.037360.966
39DAP/reference1.240580.286
41DAP/reference1.058550.808
42DAP/reference1.493370.001
43DAP/reference1.456960.008
47DAP/reference1.410870.001
52DAP/reference1.00360.654
57DAP/reference1.180570.084

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.232310.069
27DAP/17DAP0.903570.259
39DAP/27DAP0.858450.17
41DAP/39DAP1.279570.427
42DAP/41DAP0.966570.717
43DAP/42DAP0.729550.022
47DAP/43DAP1.033930.892
52DAP/47DAP0.848210.188
57DAP/52DAP1.122670.5
57DAP/7DAP0.817231

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.75240.024
17DAP/reference1.9610.006
27DAP/reference1.897210.006
39DAP/reference1.787660.005
41DAP/reference1.634620.008
42DAP/reference1.568140.007
43DAP/reference1.368620.014
47DAP/reference1.496450.016
52DAP/reference1.746970.009
57DAP/reference1.733730.005

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.273830.284
17DAP/reference1.546680.007
27DAP/reference1.682850.014
39DAP/reference1.640060.014
41DAP/reference1.564470.006
42DAP/reference1.355620.009
43DAP/reference1.103681
47DAP/reference1.60940.009
52DAP/reference1.116750.074
57DAP/reference1.244070.193

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.652070.018
17DAP/reference1.296850.139
27DAP/reference1.527010.036
39DAP/reference1.493610.006
41DAP/reference1.451220.01
42DAP/reference1.554760.007
43DAP/reference1.790010.007
47DAP/reference1.23630.081
52DAP/reference1.364440.072
57DAP/reference1.473380.069

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.219570.966
26DAP/20DAP1.677270.176
34DAP/26DAP1.310881
51DAP/34DAP0.5930.061
52DAP/51DAP0.962851
53DAP/52DAP0.931140.844
55DAP/53DAP0.651970.021
57DAP/55DAP1.319880.87
62DAP/57DAP1.07920.678
68DAP/62DAP1.021770.863
68DAP/14DAP1.147940.453

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker3.061550.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.988960.847
Mature Green Tomato/Ripe Tomato1.39157
Immature Eggplant/Mature Eggplant1.148350.15
Ripe Pepper/Ripe Tomato0.941931
Mature Eggplant/Ripe Tomato0.907391

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.663310.613
1-1-2/M821.207221
12-2/M820.755470.955
12-4/M821.118231
1-3/M821.712350.26
2-1-1/M821.100730.457
2-1/M820.925171
2-6/M821.053410.594
3-2/M821.132220.463
4-1-1/M821.240951
4-1/M82N/AN/A
4-3-2/M820.83423
4-3/M821.266310.268
5-3/M821.42970.572
6-2/M821.619470.253
6-3/M820.964611
7-1/M821.184680.598
7-2/M821.231861
9-3-2/M821.107761

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.622940.243
IL2-6/WTpooled1.029561
IL7-5/WTpooled0.526051
IL7-3/WTpooled0.848460.418
IL12-4/WTpooled0.910031
IL1-4/WTpooled0.896950.834
WT/WTpooled1.111211

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.061221

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.950791
DC3000/delta hrp 6h0.820210.914
DC3000/delta hrp 12h1.016491
DC3000/delta hrp 24h1.018251

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.967361
DC3000 delta B/DC3000 delta AB1.075240.503

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.953211
Exp 36h1.382421
Exp 60h1.031490.994

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.007381
Var 0h1.308130.289
Var 12h I row2-row10.978560.948
Var 12h NI row2-row11.191651
Var 36h I row2-row11.252030.601
Var 36h NI row2-row13.626751
Var 60h I row2-row10.966480.952
Var 60h NI row2-row10.785920.292
Time course 0hI-0hNI0.906350.256
Time course 12hI-12hNI1.051170.709
Time course 36hI-36hNI1.256660.248
Time course 60hI-60hNI1.454390.017

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.834850.324
transgenic ySAMdc/azygous control (breaker)1.176961
transgenic ySAMdc/azygous control (red)0.991071

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.143050.17

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.997451

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.773730.172
Manapal/WT (break)0.766260.299
Manapal/WT (red)1.6840.133