Expression of 1-1-2.4.1.12
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.10446 | 0.786 |
27DAP/17DAP | 0.93727 | 0.889 |
39DAP/27DAP | 1.33382 | 0.307 |
41DAP/39DAP | 0.70749 | 0.083 |
42DAP/41DAP | 1.05443 | 0.978 |
43DAP/42DAP | 1.0941 | 1 |
47DAP/43DAP | 0.83805 | 0.484 |
52DAP/47DAP | 1.02049 | 0.984 |
57DAP/52DAP | 1.23372 | 0.694 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.4444 | 0.011 |
17DAP/reference | 1.27797 | 0.059 |
27DAP/reference | 1.03736 | 0.966 |
39DAP/reference | 1.24058 | 0.286 |
41DAP/reference | 1.05855 | 0.808 |
42DAP/reference | 1.49337 | 0.001 |
43DAP/reference | 1.45696 | 0.008 |
47DAP/reference | 1.41087 | 0.001 |
52DAP/reference | 1.0036 | 0.654 |
57DAP/reference | 1.18057 | 0.084 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.23231 | 0.069 |
27DAP/17DAP | 0.90357 | 0.259 |
39DAP/27DAP | 0.85845 | 0.17 |
41DAP/39DAP | 1.27957 | 0.427 |
42DAP/41DAP | 0.96657 | 0.717 |
43DAP/42DAP | 0.72955 | 0.022 |
47DAP/43DAP | 1.03393 | 0.892 |
52DAP/47DAP | 0.84821 | 0.188 |
57DAP/52DAP | 1.12267 | 0.5 |
57DAP/7DAP | 0.81723 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.7524 | 0.024 |
17DAP/reference | 1.961 | 0.006 |
27DAP/reference | 1.89721 | 0.006 |
39DAP/reference | 1.78766 | 0.005 |
41DAP/reference | 1.63462 | 0.008 |
42DAP/reference | 1.56814 | 0.007 |
43DAP/reference | 1.36862 | 0.014 |
47DAP/reference | 1.49645 | 0.016 |
52DAP/reference | 1.74697 | 0.009 |
57DAP/reference | 1.73373 | 0.005 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.27383 | 0.284 |
17DAP/reference | 1.54668 | 0.007 |
27DAP/reference | 1.68285 | 0.014 |
39DAP/reference | 1.64006 | 0.014 |
41DAP/reference | 1.56447 | 0.006 |
42DAP/reference | 1.35562 | 0.009 |
43DAP/reference | 1.10368 | 1 |
47DAP/reference | 1.6094 | 0.009 |
52DAP/reference | 1.11675 | 0.074 |
57DAP/reference | 1.24407 | 0.193 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.65207 | 0.018 |
17DAP/reference | 1.29685 | 0.139 |
27DAP/reference | 1.52701 | 0.036 |
39DAP/reference | 1.49361 | 0.006 |
41DAP/reference | 1.45122 | 0.01 |
42DAP/reference | 1.55476 | 0.007 |
43DAP/reference | 1.79001 | 0.007 |
47DAP/reference | 1.2363 | 0.081 |
52DAP/reference | 1.36444 | 0.072 |
57DAP/reference | 1.47338 | 0.069 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.21957 | 0.966 |
26DAP/20DAP | 1.67727 | 0.176 |
34DAP/26DAP | 1.31088 | 1 |
51DAP/34DAP | 0.593 | 0.061 |
52DAP/51DAP | 0.96285 | 1 |
53DAP/52DAP | 0.93114 | 0.844 |
55DAP/53DAP | 0.65197 | 0.021 |
57DAP/55DAP | 1.31988 | 0.87 |
62DAP/57DAP | 1.0792 | 0.678 |
68DAP/62DAP | 1.02177 | 0.863 |
68DAP/14DAP | 1.14794 | 0.453 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 3.06155 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.98896 | 0.847 |
Mature Green Tomato/Ripe Tomato | 1.39157 | |
Immature Eggplant/Mature Eggplant | 1.14835 | 0.15 |
Ripe Pepper/Ripe Tomato | 0.94193 | 1 |
Mature Eggplant/Ripe Tomato | 0.90739 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.66331 | 0.613 |
1-1-2/M82 | 1.20722 | 1 |
12-2/M82 | 0.75547 | 0.955 |
12-4/M82 | 1.11823 | 1 |
1-3/M82 | 1.71235 | 0.26 |
2-1-1/M82 | 1.10073 | 0.457 |
2-1/M82 | 0.92517 | 1 |
2-6/M82 | 1.05341 | 0.594 |
3-2/M82 | 1.13222 | 0.463 |
4-1-1/M82 | 1.24095 | 1 |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 0.83423 | |
4-3/M82 | 1.26631 | 0.268 |
5-3/M82 | 1.4297 | 0.572 |
6-2/M82 | 1.61947 | 0.253 |
6-3/M82 | 0.96461 | 1 |
7-1/M82 | 1.18468 | 0.598 |
7-2/M82 | 1.23186 | 1 |
9-3-2/M82 | 1.10776 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.62294 | 0.243 |
IL2-6/WTpooled | 1.02956 | 1 |
IL7-5/WTpooled | 0.52605 | 1 |
IL7-3/WTpooled | 0.84846 | 0.418 |
IL12-4/WTpooled | 0.91003 | 1 |
IL1-4/WTpooled | 0.89695 | 0.834 |
WT/WTpooled | 1.11121 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.06122 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.95079 | 1 |
DC3000/delta hrp 6h | 0.82021 | 0.914 |
DC3000/delta hrp 12h | 1.01649 | 1 |
DC3000/delta hrp 24h | 1.01825 | 1 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.96736 | 1 |
DC3000 delta B/DC3000 delta AB | 1.07524 | 0.503 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.95321 | 1 |
Exp 36h | 1.38242 | 1 |
Exp 60h | 1.03149 | 0.994 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00738 | 1 |
Var 0h | 1.30813 | 0.289 |
Var 12h I row2-row1 | 0.97856 | 0.948 |
Var 12h NI row2-row1 | 1.19165 | 1 |
Var 36h I row2-row1 | 1.25203 | 0.601 |
Var 36h NI row2-row1 | 3.62675 | 1 |
Var 60h I row2-row1 | 0.96648 | 0.952 |
Var 60h NI row2-row1 | 0.78592 | 0.292 |
Time course 0hI-0hNI | 0.90635 | 0.256 |
Time course 12hI-12hNI | 1.05117 | 0.709 |
Time course 36hI-36hNI | 1.25666 | 0.248 |
Time course 60hI-60hNI | 1.45439 | 0.017 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.83485 | 0.324 |
transgenic ySAMdc/azygous control (breaker) | 1.17696 | 1 |
transgenic ySAMdc/azygous control (red) | 0.99107 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.14305 | 0.17 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.99745 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.77373 | 0.172 |
Manapal/WT (break) | 0.76626 | 0.299 |
Manapal/WT (red) | 1.684 | 0.133 |
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