Expression of 1-1-2.4.1.15

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP6.603350.016
27DAP/17DAP1.062620.926
39DAP/27DAP2.009360.073
41DAP/39DAP0.654380.053
42DAP/41DAP1.079741
43DAP/42DAP1.007540.925
47DAP/43DAP0.790220.386
52DAP/47DAP0.385660.033
57DAP/52DAP1.270970.977

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.737430.111
17DAP/reference1.216460.457
27DAP/reference2.200260.01
39DAP/reference3.670590.012
41DAP/reference2.576430.013
42DAP/reference3.533580.001
43DAP/reference1.883410.007
47DAP/reference1.94610.001
52DAP/reference0.840890.139
57DAP/reference1.337930.014

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP2.134950.037
27DAP/17DAP1.442270.031
39DAP/27DAP0.993611
41DAP/39DAP1.476130.914
42DAP/41DAP0.827770.126
43DAP/42DAP0.87170.143
47DAP/43DAP0.753790.012
52DAP/47DAP1.511170.074
57DAP/52DAP0.716780.049
57DAP/7DAP2.150030.249

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.278720.166
17DAP/reference1.656660.01
27DAP/reference2.747620.006
39DAP/reference3.281090.006
41DAP/reference5.336630.006
42DAP/reference4.724550.006
43DAP/reference3.476920.006
47DAP/reference2.541670.014
52DAP/reference3.534890.007
57DAP/reference3.06770.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.334910.006
17DAP/reference1.269330.161
27DAP/reference2.204810.06
39DAP/reference3.502320.011
41DAP/reference5.184320.004
42DAP/reference3.166130.007
43DAP/reference1.270010.489
47DAP/reference4.932760.008
52DAP/reference2.363750.006
57DAP/reference2.068440.066

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.412420.026
17DAP/reference1.093580.814
27DAP/reference1.603650.033
39DAP/reference3.224850.004
41DAP/reference2.538290.006
42DAP/reference3.4280.006
43DAP/reference3.499380.011
47DAP/reference1.165920.388
52DAP/reference0.83820.189
57DAP/reference1.632160.113

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.115680.966
26DAP/20DAP0.599830.223
34DAP/26DAP0.826950.834
51DAP/34DAP1.033010.96
52DAP/51DAP1.184830.742
53DAP/52DAP0.716990.245
55DAP/53DAP0.743540.188
57DAP/55DAP0.89570.619
62DAP/57DAP0.834910.162
68DAP/62DAP1.184130.336
68DAP/14DAP0.881231

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker40.24350.019

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper4.659140.058
Mature Green Tomato/Ripe Tomato1.467670.209
Immature Eggplant/Mature Eggplant9.52980.05
Ripe Pepper/Ripe Tomato0.121140.224
Mature Eggplant/Ripe Tomato0.129240.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.807130.651
1-1-2/M821.398731
12-2/M820.978951
12-4/M821.34381
1-3/M820.35679
2-1-1/M820.842240.784
2-1/M820.910850.519
2-6/M821.07270.695
3-2/M821.013331
4-1-1/M820.935191
4-1/M820.70041
4-3-2/M820.78599
4-3/M820.919751
5-3/M821.00921
6-2/M820.707011
6-3/M820.968511
7-1/M821.111780.598
7-2/M821.061881
9-3-2/M821.106821

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.022441
IL2-6/WTpooled1.85903
IL7-5/WTpooled0.634691
IL7-3/WTpooled0.87116
IL12-4/WTpooledN/AN/A
IL1-4/WTpooled0.942890.415
WT/WTpooled0.925811

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.122960.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.041540.921
DC3000/delta hrp 6h1.026561
DC3000/delta hrp 12h1.067881
DC3000/delta hrp 24h0.843820.069

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.002431
DC3000 delta B/DC3000 delta AB1.8563

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.885761
Exp 36h0.6650.471
Exp 60h0.747470.386

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.977161
Var 0h1.132790.98
Var 12h I row2-row10.902150.627
Var 12h NI row2-row10.855020.713
Var 36h I row2-row11.231941
Var 36h NI row2-row10.829690.276
Var 60h I row2-row11.215280.543
Var 60h NI row2-row10.949681
Time course 0hI-0hNI1.034851
Time course 12hI-12hNI1.005240.892
Time course 36hI-36hNI0.752110.023
Time course 60hI-60hNI0.576970.009

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.920610.391
transgenic ySAMdc/azygous control (breaker)0.896140.49
transgenic ySAMdc/azygous control (red)1.396380.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.009550.687

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.020421

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.86271
Manapal/WT (break)1.08990.183
Manapal/WT (red)1.302790.222