Expression of 1-1-2.4.1.15
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 6.60335 | 0.016 |
27DAP/17DAP | 1.06262 | 0.926 |
39DAP/27DAP | 2.00936 | 0.073 |
41DAP/39DAP | 0.65438 | 0.053 |
42DAP/41DAP | 1.07974 | 1 |
43DAP/42DAP | 1.00754 | 0.925 |
47DAP/43DAP | 0.79022 | 0.386 |
52DAP/47DAP | 0.38566 | 0.033 |
57DAP/52DAP | 1.27097 | 0.977 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.73743 | 0.111 |
17DAP/reference | 1.21646 | 0.457 |
27DAP/reference | 2.20026 | 0.01 |
39DAP/reference | 3.67059 | 0.012 |
41DAP/reference | 2.57643 | 0.013 |
42DAP/reference | 3.53358 | 0.001 |
43DAP/reference | 1.88341 | 0.007 |
47DAP/reference | 1.9461 | 0.001 |
52DAP/reference | 0.84089 | 0.139 |
57DAP/reference | 1.33793 | 0.014 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 2.13495 | 0.037 |
27DAP/17DAP | 1.44227 | 0.031 |
39DAP/27DAP | 0.99361 | 1 |
41DAP/39DAP | 1.47613 | 0.914 |
42DAP/41DAP | 0.82777 | 0.126 |
43DAP/42DAP | 0.8717 | 0.143 |
47DAP/43DAP | 0.75379 | 0.012 |
52DAP/47DAP | 1.51117 | 0.074 |
57DAP/52DAP | 0.71678 | 0.049 |
57DAP/7DAP | 2.15003 | 0.249 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.27872 | 0.166 |
17DAP/reference | 1.65666 | 0.01 |
27DAP/reference | 2.74762 | 0.006 |
39DAP/reference | 3.28109 | 0.006 |
41DAP/reference | 5.33663 | 0.006 |
42DAP/reference | 4.72455 | 0.006 |
43DAP/reference | 3.47692 | 0.006 |
47DAP/reference | 2.54167 | 0.014 |
52DAP/reference | 3.53489 | 0.007 |
57DAP/reference | 3.0677 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.33491 | 0.006 |
17DAP/reference | 1.26933 | 0.161 |
27DAP/reference | 2.20481 | 0.06 |
39DAP/reference | 3.50232 | 0.011 |
41DAP/reference | 5.18432 | 0.004 |
42DAP/reference | 3.16613 | 0.007 |
43DAP/reference | 1.27001 | 0.489 |
47DAP/reference | 4.93276 | 0.008 |
52DAP/reference | 2.36375 | 0.006 |
57DAP/reference | 2.06844 | 0.066 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.41242 | 0.026 |
17DAP/reference | 1.09358 | 0.814 |
27DAP/reference | 1.60365 | 0.033 |
39DAP/reference | 3.22485 | 0.004 |
41DAP/reference | 2.53829 | 0.006 |
42DAP/reference | 3.428 | 0.006 |
43DAP/reference | 3.49938 | 0.011 |
47DAP/reference | 1.16592 | 0.388 |
52DAP/reference | 0.8382 | 0.189 |
57DAP/reference | 1.63216 | 0.113 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.11568 | 0.966 |
26DAP/20DAP | 0.59983 | 0.223 |
34DAP/26DAP | 0.82695 | 0.834 |
51DAP/34DAP | 1.03301 | 0.96 |
52DAP/51DAP | 1.18483 | 0.742 |
53DAP/52DAP | 0.71699 | 0.245 |
55DAP/53DAP | 0.74354 | 0.188 |
57DAP/55DAP | 0.8957 | 0.619 |
62DAP/57DAP | 0.83491 | 0.162 |
68DAP/62DAP | 1.18413 | 0.336 |
68DAP/14DAP | 0.88123 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 40.2435 | 0.019 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 4.65914 | 0.058 |
Mature Green Tomato/Ripe Tomato | 1.46767 | 0.209 |
Immature Eggplant/Mature Eggplant | 9.5298 | 0.05 |
Ripe Pepper/Ripe Tomato | 0.12114 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.12924 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.80713 | 0.651 |
1-1-2/M82 | 1.39873 | 1 |
12-2/M82 | 0.97895 | 1 |
12-4/M82 | 1.3438 | 1 |
1-3/M82 | 0.35679 | |
2-1-1/M82 | 0.84224 | 0.784 |
2-1/M82 | 0.91085 | 0.519 |
2-6/M82 | 1.0727 | 0.695 |
3-2/M82 | 1.01333 | 1 |
4-1-1/M82 | 0.93519 | 1 |
4-1/M82 | 0.70041 | |
4-3-2/M82 | 0.78599 | |
4-3/M82 | 0.91975 | 1 |
5-3/M82 | 1.0092 | 1 |
6-2/M82 | 0.70701 | 1 |
6-3/M82 | 0.96851 | 1 |
7-1/M82 | 1.11178 | 0.598 |
7-2/M82 | 1.06188 | 1 |
9-3-2/M82 | 1.10682 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.02244 | 1 |
IL2-6/WTpooled | 1.85903 | |
IL7-5/WTpooled | 0.63469 | 1 |
IL7-3/WTpooled | 0.87116 | |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | 0.94289 | 0.415 |
WT/WTpooled | 0.92581 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.12296 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.04154 | 0.921 |
DC3000/delta hrp 6h | 1.02656 | 1 |
DC3000/delta hrp 12h | 1.06788 | 1 |
DC3000/delta hrp 24h | 0.84382 | 0.069 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.00243 | 1 |
DC3000 delta B/DC3000 delta AB | 1.8563 | |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.88576 | 1 |
Exp 36h | 0.665 | 0.471 |
Exp 60h | 0.74747 | 0.386 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.97716 | 1 |
Var 0h | 1.13279 | 0.98 |
Var 12h I row2-row1 | 0.90215 | 0.627 |
Var 12h NI row2-row1 | 0.85502 | 0.713 |
Var 36h I row2-row1 | 1.23194 | 1 |
Var 36h NI row2-row1 | 0.82969 | 0.276 |
Var 60h I row2-row1 | 1.21528 | 0.543 |
Var 60h NI row2-row1 | 0.94968 | 1 |
Time course 0hI-0hNI | 1.03485 | 1 |
Time course 12hI-12hNI | 1.00524 | 0.892 |
Time course 36hI-36hNI | 0.75211 | 0.023 |
Time course 60hI-60hNI | 0.57697 | 0.009 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.92061 | 0.391 |
transgenic ySAMdc/azygous control (breaker) | 0.89614 | 0.49 |
transgenic ySAMdc/azygous control (red) | 1.39638 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.00955 | 0.687 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.02042 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.8627 | 1 |
Manapal/WT (break) | 1.0899 | 0.183 |
Manapal/WT (red) | 1.30279 | 0.222 |
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