Expression of 1-1-2.4.1.19
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.90766 | 0.586 |
27DAP/17DAP | 1.04295 | 0.926 |
39DAP/27DAP | 0.97073 | 0.749 |
41DAP/39DAP | 0.88447 | 0.662 |
42DAP/41DAP | 0.92802 | 1 |
43DAP/42DAP | 1.11188 | 1 |
47DAP/43DAP | 1.05577 | 0.809 |
52DAP/47DAP | 1.11711 | 0.941 |
57DAP/52DAP | 1.2731 | 0.694 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.77458 | 0.024 |
17DAP/reference | 0.72715 | 0.007 |
27DAP/reference | 0.94673 | 0.514 |
39DAP/reference | 0.80947 | 0.029 |
41DAP/reference | 0.63901 | 0.008 |
42DAP/reference | 0.89409 | 0.014 |
43DAP/reference | 0.89275 | 0.061 |
47DAP/reference | 0.92256 | 0.174 |
52DAP/reference | 1.18832 | 0.069 |
57DAP/reference | 1.24814 | 0.011 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.29637 | 0.348 |
27DAP/17DAP | 1.00993 | 1 |
39DAP/27DAP | 0.89406 | 0.622 |
41DAP/39DAP | 1.24039 | 0.59 |
42DAP/41DAP | 0.85118 | 0.156 |
43DAP/42DAP | 0.87458 | 0.246 |
47DAP/43DAP | 1.2209 | 0.182 |
52DAP/47DAP | 1.07979 | 0.868 |
57DAP/52DAP | 1.20556 | 0.298 |
57DAP/7DAP | 0.73946 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.85593 | 0.27 |
17DAP/reference | 0.91261 | 0.295 |
27DAP/reference | 0.96614 | |
39DAP/reference | 1.126 | 0.511 |
41DAP/reference | 1.00152 | 0.811 |
42DAP/reference | 0.91833 | 0.355 |
43DAP/reference | 0.98923 | 0.502 |
47DAP/reference | 1.15161 | 0.525 |
52DAP/reference | 1.09371 | 0.401 |
57DAP/reference | 1.17958 | 0.851 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.71056 | 0.009 |
17DAP/reference | 0.92164 | 0.307 |
27DAP/reference | 0.83606 | 0.032 |
39DAP/reference | 1.04287 | 0.489 |
41DAP/reference | 1.00734 | 0.749 |
42DAP/reference | 0.86536 | 0.042 |
43DAP/reference | 0.68419 | 0.008 |
47DAP/reference | 0.77088 | 0.012 |
52DAP/reference | 0.8975 | 0.239 |
57DAP/reference | 0.86295 | 0.099 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.84612 | 0.183 |
17DAP/reference | 0.723 | 0.144 |
27DAP/reference | 1.12483 | 0.805 |
39DAP/reference | 0.94014 | 0.643 |
41DAP/reference | 1.5135 | 0.035 |
42DAP/reference | 1.41184 | 0.167 |
43DAP/reference | 1.5298 | 0.038 |
47DAP/reference | 1.00794 | 0.646 |
52DAP/reference | 1.22174 | 0.483 |
57DAP/reference | 1.53168 | 0.013 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.16533 | 0.966 |
26DAP/20DAP | 1.05562 | 1 |
34DAP/26DAP | 0.94531 | 0.94 |
51DAP/34DAP | 0.99941 | 0.893 |
52DAP/51DAP | 0.98249 | 1 |
53DAP/52DAP | 0.92313 | 0.79 |
55DAP/53DAP | 0.79165 | 0.176 |
57DAP/55DAP | 0.88457 | 0.606 |
62DAP/57DAP | 1.21681 | 0.445 |
68DAP/62DAP | 2.14094 | 0.06 |
68DAP/14DAP | 2.49238 | 0.021 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.03928 | 0.855 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.21405 | 0.176 |
Mature Green Tomato/Ripe Tomato | 0.77243 | 0.107 |
Immature Eggplant/Mature Eggplant | 1.37552 | 0.078 |
Ripe Pepper/Ripe Tomato | 0.73093 | 0.293 |
Mature Eggplant/Ripe Tomato | 1.05478 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 1.16019 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.96551 | 1 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | 0.8911 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | 1.33837 | 0.572 |
6-2/M82 | N/A | N/A |
6-3/M82 | 0.96738 | |
7-1/M82 | 0.93932 | 0.803 |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 0.94465 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.00341 | 1 |
IL2-6/WTpooled | 1.0436 | 0.46 |
IL7-5/WTpooled | 0.82248 | 1 |
IL7-3/WTpooled | 0.86859 | 0.418 |
IL12-4/WTpooled | 0.8492 | 0.581 |
IL1-4/WTpooled | 0.8785 | 0.699 |
WT/WTpooled | 1.14234 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.08381 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.0016 | 1 |
DC3000/delta hrp 6h | 1.10846 | 0.978 |
DC3000/delta hrp 12h | 0.92352 | 1 |
DC3000/delta hrp 24h | 1.0373 | 0.633 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.96225 | 1 |
Exp 36h | 0.97912 | 0.943 |
Exp 60h | 1.00601 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.04418 | 1 |
Var 0h | 1.02897 | 1 |
Var 12h I row2-row1 | 1.08189 | 0.692 |
Var 12h NI row2-row1 | 1.14173 | 0.34 |
Var 36h I row2-row1 | 1.09578 | 1 |
Var 36h NI row2-row1 | 1.06867 | 0.852 |
Var 60h I row2-row1 | 0.91069 | 0.285 |
Var 60h NI row2-row1 | 0.93688 | 1 |
Time course 0hI-0hNI | 0.97001 | 0.827 |
Time course 12hI-12hNI | 1.02909 | 0.82 |
Time course 36hI-36hNI | 1.2737 | 0.016 |
Time course 60hI-60hNI | 1.57745 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.97273 | 0.529 |
transgenic ySAMdc/azygous control (breaker) | 1.35895 | 0.172 |
transgenic ySAMdc/azygous control (red) | 0.77173 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.08521 | 0.194 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.37035 | 0.231 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.85132 | 0.172 |
Manapal/WT (break) | 1.12807 | 1 |
Manapal/WT (red) | 0.9387 | 0.728 |
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