Expression of 1-1-2.4.1.19

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.907660.586
27DAP/17DAP1.042950.926
39DAP/27DAP0.970730.749
41DAP/39DAP0.884470.662
42DAP/41DAP0.928021
43DAP/42DAP1.111881
47DAP/43DAP1.055770.809
52DAP/47DAP1.117110.941
57DAP/52DAP1.27310.694

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.774580.024
17DAP/reference0.727150.007
27DAP/reference0.946730.514
39DAP/reference0.809470.029
41DAP/reference0.639010.008
42DAP/reference0.894090.014
43DAP/reference0.892750.061
47DAP/reference0.922560.174
52DAP/reference1.188320.069
57DAP/reference1.248140.011

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.296370.348
27DAP/17DAP1.009931
39DAP/27DAP0.894060.622
41DAP/39DAP1.240390.59
42DAP/41DAP0.851180.156
43DAP/42DAP0.874580.246
47DAP/43DAP1.22090.182
52DAP/47DAP1.079790.868
57DAP/52DAP1.205560.298
57DAP/7DAP0.739461

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.855930.27
17DAP/reference0.912610.295
27DAP/reference0.96614
39DAP/reference1.1260.511
41DAP/reference1.001520.811
42DAP/reference0.918330.355
43DAP/reference0.989230.502
47DAP/reference1.151610.525
52DAP/reference1.093710.401
57DAP/reference1.179580.851

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.710560.009
17DAP/reference0.921640.307
27DAP/reference0.836060.032
39DAP/reference1.042870.489
41DAP/reference1.007340.749
42DAP/reference0.865360.042
43DAP/reference0.684190.008
47DAP/reference0.770880.012
52DAP/reference0.89750.239
57DAP/reference0.862950.099

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.846120.183
17DAP/reference0.7230.144
27DAP/reference1.124830.805
39DAP/reference0.940140.643
41DAP/reference1.51350.035
42DAP/reference1.411840.167
43DAP/reference1.52980.038
47DAP/reference1.007940.646
52DAP/reference1.221740.483
57DAP/reference1.531680.013

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.165330.966
26DAP/20DAP1.055621
34DAP/26DAP0.945310.94
51DAP/34DAP0.999410.893
52DAP/51DAP0.982491
53DAP/52DAP0.923130.79
55DAP/53DAP0.791650.176
57DAP/55DAP0.884570.606
62DAP/57DAP1.216810.445
68DAP/62DAP2.140940.06
68DAP/14DAP2.492380.021

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.039280.855

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.214050.176
Mature Green Tomato/Ripe Tomato0.772430.107
Immature Eggplant/Mature Eggplant1.375520.078
Ripe Pepper/Ripe Tomato0.730930.293
Mature Eggplant/Ripe Tomato1.054781

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M821.16019
12-2/M82N/AN/A
12-4/M820.965511
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M820.8911
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M821.338370.572
6-2/M82N/AN/A
6-3/M820.96738
7-1/M820.939320.803
7-2/M82N/AN/A
9-3-2/M820.94465

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.003411
IL2-6/WTpooled1.04360.46
IL7-5/WTpooled0.822481
IL7-3/WTpooled0.868590.418
IL12-4/WTpooled0.84920.581
IL1-4/WTpooled0.87850.699
WT/WTpooled1.142341

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.083810.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.00161
DC3000/delta hrp 6h1.108460.978
DC3000/delta hrp 12h0.923521
DC3000/delta hrp 24h1.03730.633

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.962251
Exp 36h0.979120.943
Exp 60h1.006011

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.044181
Var 0h1.028971
Var 12h I row2-row11.081890.692
Var 12h NI row2-row11.141730.34
Var 36h I row2-row11.095781
Var 36h NI row2-row11.068670.852
Var 60h I row2-row10.910690.285
Var 60h NI row2-row10.936881
Time course 0hI-0hNI0.970010.827
Time course 12hI-12hNI1.029090.82
Time course 36hI-36hNI1.27370.016
Time course 60hI-60hNI1.577450.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.972730.529
transgenic ySAMdc/azygous control (breaker)1.358950.172
transgenic ySAMdc/azygous control (red)0.771731

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.085210.194

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.370350.231

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.851320.172
Manapal/WT (break)1.128071
Manapal/WT (red)0.93870.728