Expression of 1-1-2.4.1.20
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.00883 | 0.847 |
27DAP/17DAP | 1.15324 | 0.873 |
39DAP/27DAP | 0.61967 | 0.216 |
41DAP/39DAP | 1.33047 | 0.934 |
42DAP/41DAP | 0.8159 | 1 |
43DAP/42DAP | 1.14107 | 0.991 |
47DAP/43DAP | 0.99643 | 0.746 |
52DAP/47DAP | 1.00286 | 0.806 |
57DAP/52DAP | 1.02498 | 0.978 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98837 | 0.661 |
17DAP/reference | 1.03477 | 0.294 |
27DAP/reference | 1.03631 | 0.548 |
39DAP/reference | 0.93094 | 0.068 |
41DAP/reference | 0.95905 | 0.542 |
42DAP/reference | 0.86955 | 0.003 |
43DAP/reference | 0.91359 | 0.093 |
47DAP/reference | 0.90159 | 0.055 |
52DAP/reference | 0.83822 | 0.033 |
57DAP/reference | 0.89663 | 0.101 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.00933 | 1 |
27DAP/17DAP | 0.99962 | 0.969 |
39DAP/27DAP | 0.9958 | 1 |
41DAP/39DAP | 1.37097 | 0.531 |
42DAP/41DAP | 0.76478 | 0.025 |
43DAP/42DAP | 0.74821 | 0.025 |
47DAP/43DAP | 0.91771 | 0.588 |
52DAP/47DAP | 1.13118 | 0.549 |
57DAP/52DAP | 1.47289 | 0.05 |
57DAP/7DAP | 1.01839 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.94215 | 0.27 |
17DAP/reference | 1.198 | 0.028 |
27DAP/reference | 0.90802 | 0.117 |
39DAP/reference | 1.00889 | 1 |
41DAP/reference | 1.01988 | 1 |
42DAP/reference | 1.19955 | 0.174 |
43DAP/reference | 1.07627 | 0.483 |
47DAP/reference | 0.96811 | 0.671 |
52DAP/reference | 0.97316 | 0.477 |
57DAP/reference | 0.89568 | 0.132 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.02445 | 0.979 |
17DAP/reference | 0.93794 | 0.337 |
27DAP/reference | 0.88488 | 0.155 |
39DAP/reference | 0.78819 | 0.02 |
41DAP/reference | 0.86699 | 0.112 |
42DAP/reference | 0.86151 | 0.046 |
43DAP/reference | 0.94042 | 0.394 |
47DAP/reference | 0.89918 | 0.149 |
52DAP/reference | 0.93874 | 0.171 |
57DAP/reference | 0.99731 | 0.874 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.03467 | 1 |
17DAP/reference | 0.93382 | 0.528 |
27DAP/reference | 0.82638 | 0.319 |
39DAP/reference | 0.69747 | 0.037 |
41DAP/reference | 0.85459 | 0.064 |
42DAP/reference | 0.99631 | 1 |
43DAP/reference | 0.7196 | 0.031 |
47DAP/reference | 0.91595 | 0.093 |
52DAP/reference | 0.89954 | 0.368 |
57DAP/reference | 0.83199 | 0.054 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.15683 | 0.878 |
26DAP/20DAP | 1.16249 | 0.855 |
34DAP/26DAP | 1.30264 | 0.304 |
51DAP/34DAP | 0.78235 | 0.167 |
52DAP/51DAP | 1.48898 | 0.055 |
53DAP/52DAP | 1.04623 | 0.961 |
55DAP/53DAP | 1.13075 | 0.703 |
57DAP/55DAP | 0.82936 | 0.327 |
62DAP/57DAP | 1.3033 | 0.303 |
68DAP/62DAP | 0.94105 | 0.747 |
68DAP/14DAP | 1.0377 | 0.958 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.54753 | 0.041 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.82047 | |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | 4.23404 | |
Ripe Pepper/Ripe Tomato | 0.44753 | 0.224 |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.8618 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | 1.04531 | |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.83537 | 0.321 |
IL2-6/WTpooled | 1.1293 | 0.427 |
IL7-5/WTpooled | 0.9155 | 1 |
IL7-3/WTpooled | 0.85221 | 0.418 |
IL12-4/WTpooled | 1.28068 | 0.516 |
IL1-4/WTpooled | 0.79594 | 0.562 |
WT/WTpooled | 1.3323 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.63889 | |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.02548 | 0.921 |
DC3000/delta hrp 6h | 1.16387 | 0.95 |
DC3000/delta hrp 12h | 0.99702 | 1 |
DC3000/delta hrp 24h | 1.06286 | 0.516 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.78167 | |
DC3000 delta B/DC3000 delta AB | 0.87428 | 0.393 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.73988 | 1 |
Exp 36h | 0.936 | 0.82 |
Exp 60h | 0.94408 | 0.855 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.02515 | 1 |
Var 0h | 1.12083 | 0.782 |
Var 12h I row2-row1 | 0.93123 | 0.856 |
Var 12h NI row2-row1 | 0.90609 | 0.394 |
Var 36h I row2-row1 | 1.02052 | 1 |
Var 36h NI row2-row1 | 0.99334 | 0.852 |
Var 60h I row2-row1 | 1.00748 | 1 |
Var 60h NI row2-row1 | 0.70484 | 0.904 |
Time course 0hI-0hNI | 0.90264 | 0.381 |
Time course 12hI-12hNI | 0.92726 | 0.497 |
Time course 36hI-36hNI | 0.98349 | 0.665 |
Time course 60hI-60hNI | 0.70839 | 0.047 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.99345 | 0.862 |
transgenic ySAMdc/azygous control (breaker) | 1.04147 | 1 |
transgenic ySAMdc/azygous control (red) | 0.99156 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.03099 | 0.223 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.29706 | 0.237 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.8458 | 1 |
Manapal/WT (break) | 0.93783 | 1 |
Manapal/WT (red) | 1.41817 | 0.222 |
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