Expression of 1-1-2.4.1.20

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.008830.847
27DAP/17DAP1.153240.873
39DAP/27DAP0.619670.216
41DAP/39DAP1.330470.934
42DAP/41DAP0.81591
43DAP/42DAP1.141070.991
47DAP/43DAP0.996430.746
52DAP/47DAP1.002860.806
57DAP/52DAP1.024980.978

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.988370.661
17DAP/reference1.034770.294
27DAP/reference1.036310.548
39DAP/reference0.930940.068
41DAP/reference0.959050.542
42DAP/reference0.869550.003
43DAP/reference0.913590.093
47DAP/reference0.901590.055
52DAP/reference0.838220.033
57DAP/reference0.896630.101

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.009331
27DAP/17DAP0.999620.969
39DAP/27DAP0.99581
41DAP/39DAP1.370970.531
42DAP/41DAP0.764780.025
43DAP/42DAP0.748210.025
47DAP/43DAP0.917710.588
52DAP/47DAP1.131180.549
57DAP/52DAP1.472890.05
57DAP/7DAP1.018391

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.942150.27
17DAP/reference1.1980.028
27DAP/reference0.908020.117
39DAP/reference1.008891
41DAP/reference1.019881
42DAP/reference1.199550.174
43DAP/reference1.076270.483
47DAP/reference0.968110.671
52DAP/reference0.973160.477
57DAP/reference0.895680.132

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.024450.979
17DAP/reference0.937940.337
27DAP/reference0.884880.155
39DAP/reference0.788190.02
41DAP/reference0.866990.112
42DAP/reference0.861510.046
43DAP/reference0.940420.394
47DAP/reference0.899180.149
52DAP/reference0.938740.171
57DAP/reference0.997310.874

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.034671
17DAP/reference0.933820.528
27DAP/reference0.826380.319
39DAP/reference0.697470.037
41DAP/reference0.854590.064
42DAP/reference0.996311
43DAP/reference0.71960.031
47DAP/reference0.915950.093
52DAP/reference0.899540.368
57DAP/reference0.831990.054

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.156830.878
26DAP/20DAP1.162490.855
34DAP/26DAP1.302640.304
51DAP/34DAP0.782350.167
52DAP/51DAP1.488980.055
53DAP/52DAP1.046230.961
55DAP/53DAP1.130750.703
57DAP/55DAP0.829360.327
62DAP/57DAP1.30330.303
68DAP/62DAP0.941050.747
68DAP/14DAP1.03770.958

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.547530.041

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.82047
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature Eggplant4.23404
Ripe Pepper/Ripe Tomato0.447530.224
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M820.8618
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M821.04531
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.835370.321
IL2-6/WTpooled1.12930.427
IL7-5/WTpooled0.91551
IL7-3/WTpooled0.852210.418
IL12-4/WTpooled1.280680.516
IL1-4/WTpooled0.795940.562
WT/WTpooled1.33231

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.63889

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.025480.921
DC3000/delta hrp 6h1.163870.95
DC3000/delta hrp 12h0.997021
DC3000/delta hrp 24h1.062860.516

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.78167
DC3000 delta B/DC3000 delta AB0.874280.393

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.739881
Exp 36h0.9360.82
Exp 60h0.944080.855

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.025151
Var 0h1.120830.782
Var 12h I row2-row10.931230.856
Var 12h NI row2-row10.906090.394
Var 36h I row2-row11.020521
Var 36h NI row2-row10.993340.852
Var 60h I row2-row11.007481
Var 60h NI row2-row10.704840.904
Time course 0hI-0hNI0.902640.381
Time course 12hI-12hNI0.927260.497
Time course 36hI-36hNI0.983490.665
Time course 60hI-60hNI0.708390.047

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.993450.862
transgenic ySAMdc/azygous control (breaker)1.041471
transgenic ySAMdc/azygous control (red)0.991561

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.030990.223

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.297060.237

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.84581
Manapal/WT (break)0.937831
Manapal/WT (red)1.418170.222