Expression of 1-1-2.4.11.7
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.98815 | 0.876 |
27DAP/17DAP | 1.01471 | 0.92 |
39DAP/27DAP | 1.1504 | 0.907 |
41DAP/39DAP | 1.03994 | 0.88 |
42DAP/41DAP | 0.97228 | 1 |
43DAP/42DAP | 0.99582 | 0.937 |
47DAP/43DAP | 0.98857 | 0.92 |
52DAP/47DAP | 0.97365 | 0.913 |
57DAP/52DAP | 1.02221 | 1 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00813 | 1 |
17DAP/reference | 0.99359 | 0.777 |
27DAP/reference | 1.00405 | 0.981 |
39DAP/reference | 1.02278 | 0.557 |
41DAP/reference | 1.06433 | 0.158 |
42DAP/reference | 0.96264 | 0.124 |
43DAP/reference | 0.99062 | 0.805 |
47DAP/reference | 0.95697 | 0.046 |
52DAP/reference | 0.97334 | 0.449 |
57DAP/reference | 1.10784 | 0.079 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.04844 | |
27DAP/17DAP | 0.99386 | 0.969 |
39DAP/27DAP | 1.06296 | 0.636 |
41DAP/39DAP | 0.95508 | 0.893 |
42DAP/41DAP | 1.01907 | 1 |
43DAP/42DAP | 1.03379 | 0.627 |
47DAP/43DAP | 1.02332 | 0.873 |
52DAP/47DAP | 1.06766 | 0.826 |
57DAP/52DAP | 0.98547 | 0.782 |
57DAP/7DAP | 0.9702 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.89743 | 0.104 |
17DAP/reference | 0.99413 | 0.599 |
27DAP/reference | 0.96188 | 0.109 |
39DAP/reference | 0.90242 | 0.013 |
41DAP/reference | 0.89851 | 0.079 |
42DAP/reference | 0.83606 | 0.013 |
43DAP/reference | 0.86486 | 0.016 |
47DAP/reference | 0.87558 | 0.057 |
52DAP/reference | 0.81343 | 0.016 |
57DAP/reference | 0.91091 | 0.041 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.01453 | 0.767 |
17DAP/reference | 0.98135 | 0.422 |
27DAP/reference | 0.97941 | 0.483 |
39DAP/reference | 0.97173 | 0.381 |
41DAP/reference | 0.99738 | 0.666 |
42DAP/reference | 0.97131 | 0.355 |
43DAP/reference | 1.00213 | 0.875 |
47DAP/reference | 1.00407 | 1 |
52DAP/reference | 1.02223 | 0.417 |
57DAP/reference | 1.06859 | 0.04 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.0162 | 0.882 |
17DAP/reference | 1.00708 | 0.912 |
27DAP/reference | 0.98641 | 0.539 |
39DAP/reference | 0.99901 | 0.889 |
41DAP/reference | 0.97043 | 0.417 |
42DAP/reference | 0.92543 | 0.22 |
43DAP/reference | 0.95244 | 0.125 |
47DAP/reference | 0.96821 | 0.434 |
52DAP/reference | 1.06193 | 0.639 |
57DAP/reference | 0.91654 | 0.278 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.00633 | 0.966 |
26DAP/20DAP | 1.03513 | 0.962 |
34DAP/26DAP | 0.95345 | 0.771 |
51DAP/34DAP | 1.05531 | 0.677 |
52DAP/51DAP | 0.95145 | 0.151 |
53DAP/52DAP | N/A | N/A |
55DAP/53DAP | 1.06925 | 0.608 |
57DAP/55DAP | 1.0764 | 0.906 |
62DAP/57DAP | 1.01665 | 1 |
68DAP/62DAP | 1.01625 | 1 |
68DAP/14DAP | 1.03086 | 0.802 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.95326 | 0.378 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.00484 | |
Mature Green Tomato/Ripe Tomato | 0.98165 | 0.715 |
Immature Eggplant/Mature Eggplant | 1.05552 | 0.683 |
Ripe Pepper/Ripe Tomato | 0.71586 | 1 |
Mature Eggplant/Ripe Tomato | 0.82953 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.96246 | 0.883 |
1-1-2/M82 | 0.98565 | 1 |
12-2/M82 | 0.90131 | 0.692 |
12-4/M82 | 0.92167 | 1 |
1-3/M82 | 1.01355 | 1 |
2-1-1/M82 | 0.97881 | 1 |
2-1/M82 | 1.33527 | 1 |
2-6/M82 | 0.94792 | 1 |
3-2/M82 | 0.96421 | 1 |
4-1-1/M82 | 1.00118 | 1 |
4-1/M82 | 0.9635 | 1 |
4-3-2/M82 | 0.99943 | 1 |
4-3/M82 | 0.99827 | 1 |
5-3/M82 | 1.02635 | 1 |
6-2/M82 | 1.09463 | 1 |
6-3/M82 | 0.99349 | 1 |
7-1/M82 | 0.98302 | 1 |
7-2/M82 | 0.98884 | 1 |
9-3-2/M82 | 0.94916 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.04646 | 1 |
IL2-6/WTpooled | 1.19974 | 0.441 |
IL7-5/WTpooled | 0.19535 | |
IL7-3/WTpooled | 0.92966 | 1 |
IL12-4/WTpooled | 1.23948 | |
IL1-4/WTpooled | 0.76956 | |
WT/WTpooled | 1.03132 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.24018 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.04843 | 0.692 |
DC3000/delta hrp 6h | 1.18544 | 1 |
DC3000/delta hrp 12h | 0.99693 | 1 |
DC3000/delta hrp 24h | 0.97924 | 0.924 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.22901 | 0.25 |
DC3000 delta B/DC3000 delta AB | 1.03126 | 0.586 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.30501 | 0.196 |
Exp 36h | 1.62893 | 0.409 |
Exp 60h | 1.84025 | 0.226 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99651 | 1 |
Var 0h | 3.64222 | 0.936 |
Var 12h I row2-row1 | 1.08343 | 0.379 |
Var 12h NI row2-row1 | 0.99304 | 1 |
Var 36h I row2-row1 | 1.08196 | 1 |
Var 36h NI row2-row1 | 0.85393 | 0.645 |
Var 60h I row2-row1 | 1.06637 | 0.543 |
Var 60h NI row2-row1 | 1.05451 | 1 |
Time course 0hI-0hNI | 1.00405 | 1 |
Time course 12hI-12hNI | 1.02671 | 0.77 |
Time course 36hI-36hNI | 1.07938 | 0.023 |
Time course 60hI-60hNI | 1.48819 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.07999 | 0.541 |
transgenic ySAMdc/azygous control (breaker) | 0.81516 | 0.49 |
transgenic ySAMdc/azygous control (red) | 1.25229 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.95537 | 0.177 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.66481 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.14898 | 0.14 |
Manapal/WT (break) | 0.7538 | 1 |
Manapal/WT (red) | 0.88123 | 0.424 |
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