Expression of 1-1-2.4.11.7

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.988150.876
27DAP/17DAP1.014710.92
39DAP/27DAP1.15040.907
41DAP/39DAP1.039940.88
42DAP/41DAP0.972281
43DAP/42DAP0.995820.937
47DAP/43DAP0.988570.92
52DAP/47DAP0.973650.913
57DAP/52DAP1.022211

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.008131
17DAP/reference0.993590.777
27DAP/reference1.004050.981
39DAP/reference1.022780.557
41DAP/reference1.064330.158
42DAP/reference0.962640.124
43DAP/reference0.990620.805
47DAP/reference0.956970.046
52DAP/reference0.973340.449
57DAP/reference1.107840.079

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.04844
27DAP/17DAP0.993860.969
39DAP/27DAP1.062960.636
41DAP/39DAP0.955080.893
42DAP/41DAP1.019071
43DAP/42DAP1.033790.627
47DAP/43DAP1.023320.873
52DAP/47DAP1.067660.826
57DAP/52DAP0.985470.782
57DAP/7DAP0.9702

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.897430.104
17DAP/reference0.994130.599
27DAP/reference0.961880.109
39DAP/reference0.902420.013
41DAP/reference0.898510.079
42DAP/reference0.836060.013
43DAP/reference0.864860.016
47DAP/reference0.875580.057
52DAP/reference0.813430.016
57DAP/reference0.910910.041

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.014530.767
17DAP/reference0.981350.422
27DAP/reference0.979410.483
39DAP/reference0.971730.381
41DAP/reference0.997380.666
42DAP/reference0.971310.355
43DAP/reference1.002130.875
47DAP/reference1.004071
52DAP/reference1.022230.417
57DAP/reference1.068590.04

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.01620.882
17DAP/reference1.007080.912
27DAP/reference0.986410.539
39DAP/reference0.999010.889
41DAP/reference0.970430.417
42DAP/reference0.925430.22
43DAP/reference0.952440.125
47DAP/reference0.968210.434
52DAP/reference1.061930.639
57DAP/reference0.916540.278

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.006330.966
26DAP/20DAP1.035130.962
34DAP/26DAP0.953450.771
51DAP/34DAP1.055310.677
52DAP/51DAP0.951450.151
53DAP/52DAPN/AN/A
55DAP/53DAP1.069250.608
57DAP/55DAP1.07640.906
62DAP/57DAP1.016651
68DAP/62DAP1.016251
68DAP/14DAP1.030860.802

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.953260.378

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.00484
Mature Green Tomato/Ripe Tomato0.981650.715
Immature Eggplant/Mature Eggplant1.055520.683
Ripe Pepper/Ripe Tomato0.715861
Mature Eggplant/Ripe Tomato0.829531

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.962460.883
1-1-2/M820.985651
12-2/M820.901310.692
12-4/M820.921671
1-3/M821.013551
2-1-1/M820.978811
2-1/M821.335271
2-6/M820.947921
3-2/M820.964211
4-1-1/M821.001181
4-1/M820.96351
4-3-2/M820.999431
4-3/M820.998271
5-3/M821.026351
6-2/M821.094631
6-3/M820.993491
7-1/M820.983021
7-2/M820.988841
9-3-2/M820.949161

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.046461
IL2-6/WTpooled1.199740.441
IL7-5/WTpooled0.19535
IL7-3/WTpooled0.929661
IL12-4/WTpooled1.23948
IL1-4/WTpooled0.76956
WT/WTpooled1.031321

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.240180.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.048430.692
DC3000/delta hrp 6h1.185441
DC3000/delta hrp 12h0.996931
DC3000/delta hrp 24h0.979240.924

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.229010.25
DC3000 delta B/DC3000 delta AB1.031260.586

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.305010.196
Exp 36h1.628930.409
Exp 60h1.840250.226

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.996511
Var 0h3.642220.936
Var 12h I row2-row11.083430.379
Var 12h NI row2-row10.993041
Var 36h I row2-row11.081961
Var 36h NI row2-row10.853930.645
Var 60h I row2-row11.066370.543
Var 60h NI row2-row11.054511
Time course 0hI-0hNI1.004051
Time course 12hI-12hNI1.026710.77
Time course 36hI-36hNI1.079380.023
Time course 60hI-60hNI1.488190.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.079990.541
transgenic ySAMdc/azygous control (breaker)0.815160.49
transgenic ySAMdc/azygous control (red)1.252290.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.955370.177

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.664810.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.148980.14
Manapal/WT (break)0.75381
Manapal/WT (red)0.881230.424