Expression of 1-1-2.4.12.16
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.08698 | 0.838 |
27DAP/17DAP | 1.22683 | 0.881 |
39DAP/27DAP | 1.03153 | 1 |
41DAP/39DAP | 1.10757 | 0.642 |
42DAP/41DAP | 1.0729 | 0.937 |
43DAP/42DAP | 0.95482 | 0.877 |
47DAP/43DAP | 0.95033 | 0.821 |
52DAP/47DAP | 1.11948 | 0.794 |
57DAP/52DAP | 1.14839 | 0.688 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.13626 | 0.46 |
17DAP/reference | 1.15952 | 0.017 |
27DAP/reference | 1.06022 | 0.211 |
39DAP/reference | 1.07422 | 0.104 |
41DAP/reference | 1.08783 | 0.067 |
42DAP/reference | 0.83704 | 0.007 |
43DAP/reference | 0.995 | 0.861 |
47DAP/reference | 0.82874 | 0.012 |
52DAP/reference | 0.75663 | 0.017 |
57DAP/reference | 0.7831 | 0.03 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.95261 | 0.428 |
27DAP/17DAP | 1.02644 | 0.915 |
39DAP/27DAP | 1.02433 | 0.677 |
41DAP/39DAP | 1.02958 | 0.781 |
42DAP/41DAP | 0.99691 | 0.907 |
43DAP/42DAP | 1.01566 | 0.585 |
47DAP/43DAP | 0.99107 | 0.954 |
52DAP/47DAP | 1.00044 | 1 |
57DAP/52DAP | 0.97779 | 0.591 |
57DAP/7DAP | 1.05912 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.88942 | 0.402 |
17DAP/reference | 1.06925 | 0.525 |
27DAP/reference | 0.98697 | 0.53 |
39DAP/reference | 1.01245 | 1 |
41DAP/reference | 0.84591 | 0.067 |
42DAP/reference | 0.80849 | 0.034 |
43DAP/reference | 0.82162 | 0.016 |
47DAP/reference | 0.81611 | 0.128 |
52DAP/reference | 0.79547 | 0.018 |
57DAP/reference | 0.89507 | 0.066 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.18988 | 0.193 |
17DAP/reference | 1.08974 | 0.285 |
27DAP/reference | 0.91701 | 0.249 |
39DAP/reference | 1.0533 | 1 |
41DAP/reference | 0.84087 | 0.042 |
42DAP/reference | 0.83656 | 0.01 |
43DAP/reference | 1.262 | 0.112 |
47DAP/reference | 0.951 | 0.137 |
52DAP/reference | 1.05047 | 0.667 |
57DAP/reference | 1.22942 | 0.063 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.13361 | 0.055 |
17DAP/reference | 0.98738 | 0.739 |
27DAP/reference | 0.99179 | 0.691 |
39DAP/reference | 0.96528 | 0.246 |
41DAP/reference | 0.92921 | 0.331 |
42DAP/reference | 0.79302 | 0.041 |
43DAP/reference | 0.7581 | 0.052 |
47DAP/reference | 0.89467 | 0.231 |
52DAP/reference | 0.86008 | 0.087 |
57DAP/reference | 0.53858 | 0.016 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.91439 | 0.841 |
26DAP/20DAP | 0.96211 | 1 |
34DAP/26DAP | 0.97282 | 0.92 |
51DAP/34DAP | 0.9117 | 0.333 |
52DAP/51DAP | 0.9319 | 1 |
53DAP/52DAP | 0.94746 | 0.712 |
55DAP/53DAP | 0.91815 | 0.735 |
57DAP/55DAP | 1.16358 | 0.348 |
62DAP/57DAP | 1.08082 | 0.8 |
68DAP/62DAP | 0.77659 | 0.464 |
68DAP/14DAP | 0.51527 | 0.09 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.97599 | 0.443 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 15.4004 | 0.089 |
Mature Green Tomato/Ripe Tomato | 1.16736 | 0.523 |
Immature Eggplant/Mature Eggplant | 2.52676 | |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | 3.91102 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.93748 | 0.944 |
1-1-2/M82 | 0.73187 | 0.804 |
12-2/M82 | 1.13702 | 1 |
12-4/M82 | 1.14575 | 0.611 |
1-3/M82 | 0.71612 | 0.378 |
2-1-1/M82 | 1.11262 | 1 |
2-1/M82 | 1.34614 | |
2-6/M82 | 1.19061 | 0.594 |
3-2/M82 | 0.94748 | 1 |
4-1-1/M82 | 1.13828 | 1 |
4-1/M82 | 0.95368 | 1 |
4-3-2/M82 | 0.91219 | 1 |
4-3/M82 | 0.67699 | 0.611 |
5-3/M82 | 0.92568 | 1 |
6-2/M82 | 0.99328 | 1 |
6-3/M82 | 0.96971 | 1 |
7-1/M82 | 1.05523 | |
7-2/M82 | 1.18479 | |
9-3-2/M82 | 0.78059 | 0.449 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.96751 | 0.243 |
IL2-6/WTpooled | 1.20625 | 0.584 |
IL7-5/WTpooled | 0.68511 | 1 |
IL7-3/WTpooled | 1.06309 | 1 |
IL12-4/WTpooled | 1.00993 | 1 |
IL1-4/WTpooled | 1.06063 | 1 |
WT/WTpooled | 1.03593 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.07937 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.98361 | 1 |
DC3000/delta hrp 6h | 1.01809 | 1 |
DC3000/delta hrp 12h | 0.88383 | 1 |
DC3000/delta hrp 24h | 0.99381 | 0.897 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.06735 | 0.313 |
DC3000 delta B/DC3000 delta AB | 1.26512 | 0.126 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.09634 | 1 |
Exp 36h | 1.09779 | 1 |
Exp 60h | 0.90591 | 0.754 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98078 | 1 |
Var 0h | 1.11167 | 0.936 |
Var 12h I row2-row1 | 0.94379 | 0.856 |
Var 12h NI row2-row1 | 1.04072 | 1 |
Var 36h I row2-row1 | 1.10098 | 1 |
Var 36h NI row2-row1 | 0.67813 | 0.549 |
Var 60h I row2-row1 | 0.87501 | 0.582 |
Var 60h NI row2-row1 | 0.94041 | 0.818 |
Time course 0hI-0hNI | 1.04476 | 0.63 |
Time course 12hI-12hNI | 1.07952 | 0.654 |
Time course 36hI-36hNI | 1.495 | 0.005 |
Time course 60hI-60hNI | 3.65718 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.27677 | 0.305 |
transgenic ySAMdc/azygous control (breaker) | 1.13625 | 1 |
transgenic ySAMdc/azygous control (red) | 1.2032 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.1641 | 0.035 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.74121 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.04354 | 1 |
Manapal/WT (break) | 1.38358 | 0.381 |
Manapal/WT (red) | 1.53058 | 1 |
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