Expression of 1-1-2.4.13.14
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.93706 | 0.617 |
27DAP/17DAP | 0.93846 | 0.863 |
39DAP/27DAP | 1.13274 | 0.692 |
41DAP/39DAP | 0.97829 | 0.871 |
42DAP/41DAP | 1.12194 | 0.903 |
43DAP/42DAP | 0.9519 | 0.858 |
47DAP/43DAP | 0.93958 | 0.768 |
52DAP/47DAP | 1.38859 | 0.268 |
57DAP/52DAP | 1.08861 | 0.977 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04356 | 0.32 |
17DAP/reference | 0.96058 | 0.147 |
27DAP/reference | 0.95818 | 0.223 |
39DAP/reference | 1.02304 | 0.639 |
41DAP/reference | 0.97351 | 0.341 |
42DAP/reference | 1.08166 | 0.019 |
43DAP/reference | 1.02117 | 0.596 |
47DAP/reference | 1.02531 | 0.34 |
52DAP/reference | 1.09437 | 0.158 |
57DAP/reference | 1.07678 | 0.114 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.03475 | 0.619 |
27DAP/17DAP | 0.98194 | 0.782 |
39DAP/27DAP | 0.9964 | 1 |
41DAP/39DAP | 1.07053 | 0.427 |
42DAP/41DAP | 1.01767 | 0.916 |
43DAP/42DAP | 0.97218 | 0.431 |
47DAP/43DAP | 0.9721 | 0.833 |
52DAP/47DAP | 0.97362 | 0.898 |
57DAP/52DAP | 0.99326 | 0.852 |
57DAP/7DAP | 0.98929 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.06258 | 0.564 |
17DAP/reference | 0.97448 | 0.22 |
27DAP/reference | 0.97786 | 0.264 |
39DAP/reference | 1.07868 | 0.096 |
41DAP/reference | 0.99479 | 0.646 |
42DAP/reference | 1.07147 | 0.233 |
43DAP/reference | 1.05914 | 0.364 |
47DAP/reference | 0.96565 | 0.504 |
52DAP/reference | 1.12574 | 0.105 |
57DAP/reference | 1.15698 | 0.117 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04592 | 0.404 |
17DAP/reference | 1.10472 | 0.303 |
27DAP/reference | 1.09127 | 0.297 |
39DAP/reference | 1.07289 | 0.335 |
41DAP/reference | 0.99468 | 0.615 |
42DAP/reference | 1.09366 | 0.18 |
43DAP/reference | 1.11193 | 0.152 |
47DAP/reference | 1.02044 | 0.658 |
52DAP/reference | 1.0155 | 0.747 |
57DAP/reference | 0.97406 | 0.298 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98723 | 0.455 |
17DAP/reference | 1.01273 | 0.842 |
27DAP/reference | 0.94376 | 0.076 |
39DAP/reference | 1.02532 | 0.512 |
41DAP/reference | 1.07749 | 0.139 |
42DAP/reference | 1.04101 | 0.692 |
43DAP/reference | 1.04733 | 0.721 |
47DAP/reference | 0.98545 | 0.538 |
52DAP/reference | 0.90449 | 0.493 |
57DAP/reference | 1.08531 | 0.57 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.92405 | 0.773 |
26DAP/20DAP | 1.01437 | 1 |
34DAP/26DAP | 0.8755 | 0.311 |
51DAP/34DAP | 1.01199 | 0.898 |
52DAP/51DAP | 0.99581 | 1 |
53DAP/52DAP | 1.00579 | 0.961 |
55DAP/53DAP | 0.97997 | 0.838 |
57DAP/55DAP | 0.92842 | 0.819 |
62DAP/57DAP | 0.96864 | 0.871 |
68DAP/62DAP | 0.99024 | 0.885 |
68DAP/14DAP | 1.04714 | 0.541 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.03175 | 0.7 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.1166 | 0.417 |
Mature Green Tomato/Ripe Tomato | 1.18712 | 0.209 |
Immature Eggplant/Mature Eggplant | 1.19356 | 0.058 |
Ripe Pepper/Ripe Tomato | 0.92556 | 1 |
Mature Eggplant/Ripe Tomato | 1.68007 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.90197 | 0.907 |
1-1-2/M82 | 0.95623 | 0.958 |
12-2/M82 | 1.03481 | 1 |
12-4/M82 | 0.97402 | 1 |
1-3/M82 | 1.11802 | 0.479 |
2-1-1/M82 | 1.01279 | 1 |
2-1/M82 | 0.54807 | |
2-6/M82 | 0.92365 | 1 |
3-2/M82 | 0.94661 | 1 |
4-1-1/M82 | 1.18228 | 1 |
4-1/M82 | 0.94438 | 0.737 |
4-3-2/M82 | 1.17556 | |
4-3/M82 | 0.88332 | 1 |
5-3/M82 | 0.99017 | 1 |
6-2/M82 | 1.01235 | 1 |
6-3/M82 | 0.96589 | 1 |
7-1/M82 | 1.02839 | 1 |
7-2/M82 | 0.95365 | |
9-3-2/M82 | 0.88092 | 0.355 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.54765 | |
IL7-5/WTpooled | 0.83386 | |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | 0.476 | |
IL1-4/WTpooled | 1.51856 | |
WT/WTpooled | 1.12667 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.1626 | 0.309 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.07616 | 0.875 |
DC3000/delta hrp 6h | 0.84658 | 0.95 |
DC3000/delta hrp 12h | 1.01198 | 1 |
DC3000/delta hrp 24h | 1.00618 | 1 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.09704 | 0.355 |
DC3000 delta B/DC3000 delta AB | 1.07133 | 0.412 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.09931 | 1 |
Exp 36h | 1.24505 | 1 |
Exp 60h | 0.99533 | 0.994 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.02502 | 1 |
Var 0h | 1.57099 | 0.936 |
Var 12h I row2-row1 | 1.1195 | 0.443 |
Var 12h NI row2-row1 | 0.98981 | 1 |
Var 36h I row2-row1 | 1.06955 | 1 |
Var 36h NI row2-row1 | 0.78437 | 0.421 |
Var 60h I row2-row1 | 1.08187 | 0.562 |
Var 60h NI row2-row1 | 0.98026 | 1 |
Time course 0hI-0hNI | 1.03155 | 1 |
Time course 12hI-12hNI | 1.03458 | 0.777 |
Time course 36hI-36hNI | 1.0757 | 0.218 |
Time course 60hI-60hNI | 1.44471 | 0.012 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.00975 | 0.921 |
transgenic ySAMdc/azygous control (breaker) | 1.1206 | 1 |
transgenic ySAMdc/azygous control (red) | 1.25616 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.02165 | 0.223 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.85053 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.88465 | 0.172 |
Manapal/WT (break) | 1.24837 | 1 |
Manapal/WT (red) | 1.18308 | 0.222 |
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