Expression of 1-1-2.4.13.14

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.937060.617
27DAP/17DAP0.938460.863
39DAP/27DAP1.132740.692
41DAP/39DAP0.978290.871
42DAP/41DAP1.121940.903
43DAP/42DAP0.95190.858
47DAP/43DAP0.939580.768
52DAP/47DAP1.388590.268
57DAP/52DAP1.088610.977

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.043560.32
17DAP/reference0.960580.147
27DAP/reference0.958180.223
39DAP/reference1.023040.639
41DAP/reference0.973510.341
42DAP/reference1.081660.019
43DAP/reference1.021170.596
47DAP/reference1.025310.34
52DAP/reference1.094370.158
57DAP/reference1.076780.114

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.034750.619
27DAP/17DAP0.981940.782
39DAP/27DAP0.99641
41DAP/39DAP1.070530.427
42DAP/41DAP1.017670.916
43DAP/42DAP0.972180.431
47DAP/43DAP0.97210.833
52DAP/47DAP0.973620.898
57DAP/52DAP0.993260.852
57DAP/7DAP0.989291

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.062580.564
17DAP/reference0.974480.22
27DAP/reference0.977860.264
39DAP/reference1.078680.096
41DAP/reference0.994790.646
42DAP/reference1.071470.233
43DAP/reference1.059140.364
47DAP/reference0.965650.504
52DAP/reference1.125740.105
57DAP/reference1.156980.117

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.045920.404
17DAP/reference1.104720.303
27DAP/reference1.091270.297
39DAP/reference1.072890.335
41DAP/reference0.994680.615
42DAP/reference1.093660.18
43DAP/reference1.111930.152
47DAP/reference1.020440.658
52DAP/reference1.01550.747
57DAP/reference0.974060.298

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.987230.455
17DAP/reference1.012730.842
27DAP/reference0.943760.076
39DAP/reference1.025320.512
41DAP/reference1.077490.139
42DAP/reference1.041010.692
43DAP/reference1.047330.721
47DAP/reference0.985450.538
52DAP/reference0.904490.493
57DAP/reference1.085310.57

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.924050.773
26DAP/20DAP1.014371
34DAP/26DAP0.87550.311
51DAP/34DAP1.011990.898
52DAP/51DAP0.995811
53DAP/52DAP1.005790.961
55DAP/53DAP0.979970.838
57DAP/55DAP0.928420.819
62DAP/57DAP0.968640.871
68DAP/62DAP0.990240.885
68DAP/14DAP1.047140.541

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.031750.7

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.11660.417
Mature Green Tomato/Ripe Tomato1.187120.209
Immature Eggplant/Mature Eggplant1.193560.058
Ripe Pepper/Ripe Tomato0.925561
Mature Eggplant/Ripe Tomato1.680070.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.901970.907
1-1-2/M820.956230.958
12-2/M821.034811
12-4/M820.974021
1-3/M821.118020.479
2-1-1/M821.012791
2-1/M820.54807
2-6/M820.923651
3-2/M820.946611
4-1-1/M821.182281
4-1/M820.944380.737
4-3-2/M821.17556
4-3/M820.883321
5-3/M820.990171
6-2/M821.012351
6-3/M820.965891
7-1/M821.028391
7-2/M820.95365
9-3-2/M820.880920.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.54765
IL7-5/WTpooled0.83386
IL7-3/WTpooledN/AN/A
IL12-4/WTpooled0.476
IL1-4/WTpooled1.51856
WT/WTpooled1.126671

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.16260.309

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.076160.875
DC3000/delta hrp 6h0.846580.95
DC3000/delta hrp 12h1.011981
DC3000/delta hrp 24h1.006181

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.097040.355
DC3000 delta B/DC3000 delta AB1.071330.412

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.099311
Exp 36h1.245051
Exp 60h0.995330.994

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.025021
Var 0h1.570990.936
Var 12h I row2-row11.11950.443
Var 12h NI row2-row10.989811
Var 36h I row2-row11.069551
Var 36h NI row2-row10.784370.421
Var 60h I row2-row11.081870.562
Var 60h NI row2-row10.980261
Time course 0hI-0hNI1.031551
Time course 12hI-12hNI1.034580.777
Time course 36hI-36hNI1.07570.218
Time course 60hI-60hNI1.444710.012

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.009750.921
transgenic ySAMdc/azygous control (breaker)1.12061
transgenic ySAMdc/azygous control (red)1.256160.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.021650.223

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.850530.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.884650.172
Manapal/WT (break)1.248371
Manapal/WT (red)1.183080.222