Tomato Functional Genomics Database (TFGD)

Expression of 1-1-2.4.14.1

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	2.33536	0.348
27DAP/17DAP	1.05099	0.892
39DAP/27DAP	1.08171	0.82
41DAP/39DAP	1.1741	0.819
42DAP/41DAP	0.69957	0.774
43DAP/42DAP	0.88928	0.806
47DAP/43DAP	0.98489	0.851
52DAP/47DAP	2.13419	0.637
57DAP/52DAP	1.59719	0.96

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.14936	0.96
17DAP/reference	0.5326	0.06
27DAP/reference	1.82909
39DAP/reference	N/A	N/A
41DAP/reference	1.03594
42DAP/reference	1.55331	0.68
43DAP/reference	0.78987
47DAP/reference	1.29938	0.233
52DAP/reference	N/A	N/A
57DAP/reference	N/A	N/A

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.53293	0.096
27DAP/17DAP	0.96231	0.887
39DAP/27DAP	0.97517	0.768
41DAP/39DAP	1.27321	0.417
42DAP/41DAP	0.73592	0.213
43DAP/42DAP	1.28599	0.788
47DAP/43DAP	1.69334	0.674
52DAP/47DAP	2.16285	0.432
57DAP/52DAP	0.90647	0.601
57DAP/7DAP	0.3476

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.62955	0.066
17DAP/reference	0.68609	0.013
27DAP/reference	0.81	0.023
39DAP/reference	0.70358	0.039
41DAP/reference	0.75183	0.032
42DAP/reference	0.8095	0.073
43DAP/reference	0.8035	0.016
47DAP/reference	0.69659	0.036
52DAP/reference	0.61998	0.019
57DAP/reference	0.78696	0.069

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.95174	0.669
17DAP/reference	0.87559	0.611
27DAP/reference	0.61642	0.021
39DAP/reference	1.24639
41DAP/reference	N/A	N/A
42DAP/reference	1.02203
43DAP/reference	1.28997	1
47DAP/reference	0.68248
52DAP/reference	N/A	N/A
57DAP/reference	0.44373

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.88366	0.23
17DAP/reference	0.89273	0.417
27DAP/reference	0.81051	0.045
39DAP/reference	0.83565	0.026
41DAP/reference	0.70663	0.028
42DAP/reference	1.12545	0.671
43DAP/reference	0.69882	0.027
47DAP/reference	0.49034
52DAP/reference	0.77974	0.216
57DAP/reference	0.38222

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	0.98072	1
26DAP/20DAP	N/A	N/A
34DAP/26DAP	0.91152	0.917
51DAP/34DAP	1.24433	0.96
52DAP/51DAP	N/A	N/A
53DAP/52DAP	1.13027	0.901
55DAP/53DAP	1.10768	0.712
57DAP/55DAP	0.67713	0.057
62DAP/57DAP	1.35737	0.622
68DAP/62DAP	0.82671
68DAP/14DAP	0.9591

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	0.98925

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	N/A	N/A
Immature Eggplant/Mature Eggplant	N/A	N/A
Ripe Pepper/Ripe Tomato	N/A	N/A
Mature Eggplant/Ripe Tomato	N/A	N/A

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	N/A	N/A
1-3/M82	N/A	N/A
2-1-1/M82	N/A	N/A
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	N/A	N/A
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	N/A	N/A
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	N/A	N/A
7-2/M82	N/A	N/A
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	1.01789	1
IL2-6/WTpooled	1.00698	1
IL7-5/WTpooled	1.19961	0.792
IL7-3/WTpooled	0.75857	0.294
IL12-4/WTpooled	0.81279	0.543
IL1-4/WTpooled	1.04701	1
WT/WTpooled	0.91692	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	N/A	N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	N/A	N/A
DC3000/delta hrp 6h	N/A	N/A
DC3000/delta hrp 12h	N/A	N/A
DC3000/delta hrp 24h	N/A	N/A

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	N/A	N/A
Exp 36h	N/A	N/A
Exp 60h	N/A	N/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	N/A	N/A
Var 0h	0.83192	0.214
Var 12h I row2-row1	1.85073
Var 12h NI row2-row1	1.12017	1
Var 36h I row2-row1	1.4813
Var 36h NI row2-row1	2.67652	1
Var 60h I row2-row1	1.80913
Var 60h NI row2-row1	1.34025	1
Time course 0hI-0hNI	1.35611	0.63
Time course 12hI-12hNI	0.37891
Time course 36hI-36hNI	1.46967	0.355
Time course 60hI-60hNI	1.03705	1

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	N/A	N/A
transgenic ySAMdc/azygous control (breaker)	N/A	N/A
transgenic ySAMdc/azygous control (red)	N/A	N/A

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	N/A	N/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	N/A	N/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	N/A	N/A
Manapal/WT (break)	N/A	N/A
Manapal/WT (red)	N/A	N/A