Expression of 1-1-2.4.14.19

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.737080.089
27DAP/17DAP0.861570.606
39DAP/27DAP1.351850.426
41DAP/39DAP0.949540.727
42DAP/41DAP1.144780.958
43DAP/42DAP1.097920.945
47DAP/43DAP0.735110.228
52DAP/47DAP1.27680.605
57DAP/52DAP1.024440.992

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.191350.093
17DAP/reference1.014160.675
27DAP/reference0.897690.349
39DAP/reference0.974760.651
41DAP/reference0.907150.341
42DAP/reference0.87770.015
43DAP/reference1.000030.904
47DAP/reference0.866270.005
52DAP/reference0.876180.082
57DAP/reference1.024740.762

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.705740.045
27DAP/17DAP1.162630.488
39DAP/27DAP0.892740.432
41DAP/39DAP1.037550.773
42DAP/41DAP0.933730.545
43DAP/42DAP0.907850.367
47DAP/43DAP0.947920.757
52DAP/47DAP0.892760.553
57DAP/52DAP1.136130.457
57DAP/7DAP0.882341

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.234470.057
17DAP/reference1.446750.016
27DAP/reference1.320360.01
39DAP/reference1.496870.005
41DAP/reference1.682070.012
42DAP/reference1.430790.016
43DAP/reference1.360520.011
47DAP/reference1.292860.075
52DAP/reference1.414830.021
57DAP/reference1.307970.07

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.116260.438
17DAP/reference1.173290.086
27DAP/reference0.987440.598
39DAP/reference0.848320.108
41DAP/reference0.791060.032
42DAP/reference1.046420.915
43DAP/reference1.070410.817
47DAP/reference1.079060.377
52DAP/reference0.752020.01
57DAP/reference0.836230.024

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.414130.046
17DAP/reference1.271520.321
27DAP/reference1.673830.021
39DAP/reference1.544910.015
41DAP/reference1.349110.018
42DAP/reference1.194410.246
43DAP/reference1.055820.88
47DAP/reference0.85440.08
52DAP/reference1.440590.068
57DAP/reference0.900390.129

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.160670.966
26DAP/20DAP1.026940.962
34DAP/26DAP0.842070.783
51DAP/34DAP0.879060.385
52DAP/51DAP1.038810.848
53DAP/52DAP0.913920.712
55DAP/53DAP1.010140.917
57DAP/55DAP1.085840.87
62DAP/57DAP0.979190.994
68DAP/62DAP0.978910.834
68DAP/14DAP0.619690.09

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.857050.211

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.790130.265
Mature Green Tomato/Ripe Tomato1.16550.437
Immature Eggplant/Mature Eggplant0.550880.072
Ripe Pepper/Ripe Tomato2.282670.258
Mature Eggplant/Ripe Tomato3.115680.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.12827
1-1-2/M820.97566
12-2/M820.75291
12-4/M820.94150.619
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M821.09665
3-2/M820.84995
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M821.230281
5-3/M821.217291
6-2/M82N/AN/A
6-3/M820.991631
7-1/M821.2384
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.951491
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled0.833621
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooled0.851890.834
WT/WTpooled1.119050.957

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.02471

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.070260.921
DC3000/delta hrp 6h1.008180.95
DC3000/delta hrp 12h0.898571
DC3000/delta hrp 24h0.950940.711

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.915190.077
DC3000 delta B/DC3000 delta AB0.769580.178

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.881091
Exp 36h0.94830.879
Exp 60h0.825330.664

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.013881
Var 0hN/AN/A
Var 12h I row2-row11.09860.613
Var 12h NI row2-row11.030961
Var 36h I row2-row11.060760.489
Var 36h NI row2-row10.998641
Var 60h I row2-row11.020041
Var 60h NI row2-row10.81310.69
Time course 0hI-0hNI0.956430.734
Time course 12hI-12hNI0.995911
Time course 36hI-36hNI1.056010.513
Time course 60hI-60hNI0.70360.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.995650.862
transgenic ySAMdc/azygous control (breaker)0.729280.15
transgenic ySAMdc/azygous control (red)0.948531

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.013380.619

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.108081

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.005151
Manapal/WT (break)0.81611
Manapal/WT (red)2.037950.15