Expression of 1-1-2.4.14.19
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.73708 | 0.089 |
27DAP/17DAP | 0.86157 | 0.606 |
39DAP/27DAP | 1.35185 | 0.426 |
41DAP/39DAP | 0.94954 | 0.727 |
42DAP/41DAP | 1.14478 | 0.958 |
43DAP/42DAP | 1.09792 | 0.945 |
47DAP/43DAP | 0.73511 | 0.228 |
52DAP/47DAP | 1.2768 | 0.605 |
57DAP/52DAP | 1.02444 | 0.992 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.19135 | 0.093 |
17DAP/reference | 1.01416 | 0.675 |
27DAP/reference | 0.89769 | 0.349 |
39DAP/reference | 0.97476 | 0.651 |
41DAP/reference | 0.90715 | 0.341 |
42DAP/reference | 0.8777 | 0.015 |
43DAP/reference | 1.00003 | 0.904 |
47DAP/reference | 0.86627 | 0.005 |
52DAP/reference | 0.87618 | 0.082 |
57DAP/reference | 1.02474 | 0.762 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.70574 | 0.045 |
27DAP/17DAP | 1.16263 | 0.488 |
39DAP/27DAP | 0.89274 | 0.432 |
41DAP/39DAP | 1.03755 | 0.773 |
42DAP/41DAP | 0.93373 | 0.545 |
43DAP/42DAP | 0.90785 | 0.367 |
47DAP/43DAP | 0.94792 | 0.757 |
52DAP/47DAP | 0.89276 | 0.553 |
57DAP/52DAP | 1.13613 | 0.457 |
57DAP/7DAP | 0.88234 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.23447 | 0.057 |
17DAP/reference | 1.44675 | 0.016 |
27DAP/reference | 1.32036 | 0.01 |
39DAP/reference | 1.49687 | 0.005 |
41DAP/reference | 1.68207 | 0.012 |
42DAP/reference | 1.43079 | 0.016 |
43DAP/reference | 1.36052 | 0.011 |
47DAP/reference | 1.29286 | 0.075 |
52DAP/reference | 1.41483 | 0.021 |
57DAP/reference | 1.30797 | 0.07 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.11626 | 0.438 |
17DAP/reference | 1.17329 | 0.086 |
27DAP/reference | 0.98744 | 0.598 |
39DAP/reference | 0.84832 | 0.108 |
41DAP/reference | 0.79106 | 0.032 |
42DAP/reference | 1.04642 | 0.915 |
43DAP/reference | 1.07041 | 0.817 |
47DAP/reference | 1.07906 | 0.377 |
52DAP/reference | 0.75202 | 0.01 |
57DAP/reference | 0.83623 | 0.024 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.41413 | 0.046 |
17DAP/reference | 1.27152 | 0.321 |
27DAP/reference | 1.67383 | 0.021 |
39DAP/reference | 1.54491 | 0.015 |
41DAP/reference | 1.34911 | 0.018 |
42DAP/reference | 1.19441 | 0.246 |
43DAP/reference | 1.05582 | 0.88 |
47DAP/reference | 0.8544 | 0.08 |
52DAP/reference | 1.44059 | 0.068 |
57DAP/reference | 0.90039 | 0.129 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.16067 | 0.966 |
26DAP/20DAP | 1.02694 | 0.962 |
34DAP/26DAP | 0.84207 | 0.783 |
51DAP/34DAP | 0.87906 | 0.385 |
52DAP/51DAP | 1.03881 | 0.848 |
53DAP/52DAP | 0.91392 | 0.712 |
55DAP/53DAP | 1.01014 | 0.917 |
57DAP/55DAP | 1.08584 | 0.87 |
62DAP/57DAP | 0.97919 | 0.994 |
68DAP/62DAP | 0.97891 | 0.834 |
68DAP/14DAP | 0.61969 | 0.09 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.85705 | 0.211 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.79013 | 0.265 |
Mature Green Tomato/Ripe Tomato | 1.1655 | 0.437 |
Immature Eggplant/Mature Eggplant | 0.55088 | 0.072 |
Ripe Pepper/Ripe Tomato | 2.28267 | 0.258 |
Mature Eggplant/Ripe Tomato | 3.11568 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.12827 | |
1-1-2/M82 | 0.97566 | |
12-2/M82 | 0.75291 | |
12-4/M82 | 0.9415 | 0.619 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.09665 | |
3-2/M82 | 0.84995 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 1.23028 | 1 |
5-3/M82 | 1.21729 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | 0.99163 | 1 |
7-1/M82 | 1.2384 | |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.95149 | 1 |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | 0.83362 | 1 |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | 0.85189 | 0.834 |
WT/WTpooled | 1.11905 | 0.957 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.0247 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.07026 | 0.921 |
DC3000/delta hrp 6h | 1.00818 | 0.95 |
DC3000/delta hrp 12h | 0.89857 | 1 |
DC3000/delta hrp 24h | 0.95094 | 0.711 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.91519 | 0.077 |
DC3000 delta B/DC3000 delta AB | 0.76958 | 0.178 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.88109 | 1 |
Exp 36h | 0.9483 | 0.879 |
Exp 60h | 0.82533 | 0.664 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.01388 | 1 |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | 1.0986 | 0.613 |
Var 12h NI row2-row1 | 1.03096 | 1 |
Var 36h I row2-row1 | 1.06076 | 0.489 |
Var 36h NI row2-row1 | 0.99864 | 1 |
Var 60h I row2-row1 | 1.02004 | 1 |
Var 60h NI row2-row1 | 0.8131 | 0.69 |
Time course 0hI-0hNI | 0.95643 | 0.734 |
Time course 12hI-12hNI | 0.99591 | 1 |
Time course 36hI-36hNI | 1.05601 | 0.513 |
Time course 60hI-60hNI | 0.7036 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.99565 | 0.862 |
transgenic ySAMdc/azygous control (breaker) | 0.72928 | 0.15 |
transgenic ySAMdc/azygous control (red) | 0.94853 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.01338 | 0.619 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.10808 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.00515 | 1 |
Manapal/WT (break) | 0.8161 | 1 |
Manapal/WT (red) | 2.03795 | 0.15 |
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