Expression of 1-1-2.4.16.6

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.451440.394
27DAP/17DAP1.220910.841
39DAP/27DAP0.990980.769
41DAP/39DAP1.11980.964
42DAP/41DAP0.849551
43DAP/42DAP1.056531
47DAP/43DAP1.058840.95
52DAP/47DAP1.992320.69
57DAP/52DAP1.074280.944

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.061360.685
17DAP/reference1.20860.015
27DAP/reference0.968050.595
39DAP/reference1.101330.125
41DAP/reference1.145010.013
42DAP/reference0.917140.062
43DAP/reference1.000650.924
47DAP/reference0.836270.008
52DAP/reference0.849660.029
57DAP/reference0.816690.01

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.266390.284
27DAP/17DAP1.02230.973
39DAP/27DAP0.960310.622
41DAP/39DAP1.238920.124
42DAP/41DAP1.037030.999
43DAP/42DAP1.10930.162
47DAP/43DAP1.104220.618
52DAP/47DAP0.854970.174
57DAP/52DAP1.124470.393
57DAP/7DAP1.187021

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.950380.495
17DAP/reference0.979590.447
27DAP/reference0.885290.171
39DAP/reference0.848520.126
41DAP/reference1.046470.864
42DAP/reference1.054470.889
43DAP/reference0.970840.459
47DAP/reference1.029580.996
52DAP/reference0.909310.196
57DAP/reference0.986460.549

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.157640.056
17DAP/reference1.432140.007
27DAP/reference1.148880.203
39DAP/reference1.110290.436
41DAP/reference0.998030.584
42DAP/reference0.939470.189
43DAP/reference1.250410.082
47DAP/reference1.071240.527
52DAP/reference1.169090.041
57DAP/reference1.478580.012

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.145230.691
17DAP/reference1.102410.631
27DAP/reference1.105460.271
39DAP/reference1.034391
41DAP/reference0.950450.293
42DAP/reference0.870840.108
43DAP/reference1.087920.555
47DAP/reference0.887750.125
52DAP/reference0.867020.118
57DAP/reference0.691040.02

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.139020.966
26DAP/20DAP1.038831
34DAP/26DAP0.896950.841
51DAP/34DAP1.01670.946
52DAP/51DAP1.060090.939
53DAP/52DAP0.654480.128
55DAP/53DAP1.03580.876
57DAP/55DAP0.851470.333
62DAP/57DAP0.974920.994
68DAP/62DAP0.69480.044
68DAP/14DAP0.603030.075

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.182720.306

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.681120.051
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.521870.224
Mature Eggplant/Ripe Tomato0.33350.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M820.858530.25
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M820.79696
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M820.98961
5-3/M820.978991
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M822.01708
7-2/M821.13589
9-3-2/M820.98513

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.136180.365
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooled1.048731
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.774980.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.045710.921
DC3000/delta hrp 6h1.033721
DC3000/delta hrp 12h1.006151
DC3000/delta hrp 24h1.219950.336

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.567630.023
DC3000 delta B/DC3000 delta AB0.475070.02

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.071151
Exp 36h1.144040.693
Exp 60h1.337980.22

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.977491
Var 0h1.163640.782
Var 12h I row2-row10.741260.344
Var 12h NI row2-row11.117741
Var 36h I row2-row10.739110.805
Var 36h NI row2-row17.288831
Var 60h I row2-row11.286010.562
Var 60h NI row2-row10.974711
Time course 0hI-0hNI1.011261
Time course 12hI-12hNI0.999531
Time course 36hI-36hNI0.971240.46
Time course 60hI-60hNI0.233630.005

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.975140.348
transgenic ySAMdc/azygous control (breaker)0.781720.139
transgenic ySAMdc/azygous control (red)0.885611

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.001821

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.845730.255

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.042150.14
Manapal/WT (break)0.818931
Manapal/WT (red)0.92820.728