Expression of 1-1-2.4.16.6
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.45144 | 0.394 |
27DAP/17DAP | 1.22091 | 0.841 |
39DAP/27DAP | 0.99098 | 0.769 |
41DAP/39DAP | 1.1198 | 0.964 |
42DAP/41DAP | 0.84955 | 1 |
43DAP/42DAP | 1.05653 | 1 |
47DAP/43DAP | 1.05884 | 0.95 |
52DAP/47DAP | 1.99232 | 0.69 |
57DAP/52DAP | 1.07428 | 0.944 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.06136 | 0.685 |
17DAP/reference | 1.2086 | 0.015 |
27DAP/reference | 0.96805 | 0.595 |
39DAP/reference | 1.10133 | 0.125 |
41DAP/reference | 1.14501 | 0.013 |
42DAP/reference | 0.91714 | 0.062 |
43DAP/reference | 1.00065 | 0.924 |
47DAP/reference | 0.83627 | 0.008 |
52DAP/reference | 0.84966 | 0.029 |
57DAP/reference | 0.81669 | 0.01 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.26639 | 0.284 |
27DAP/17DAP | 1.0223 | 0.973 |
39DAP/27DAP | 0.96031 | 0.622 |
41DAP/39DAP | 1.23892 | 0.124 |
42DAP/41DAP | 1.03703 | 0.999 |
43DAP/42DAP | 1.1093 | 0.162 |
47DAP/43DAP | 1.10422 | 0.618 |
52DAP/47DAP | 0.85497 | 0.174 |
57DAP/52DAP | 1.12447 | 0.393 |
57DAP/7DAP | 1.18702 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.95038 | 0.495 |
17DAP/reference | 0.97959 | 0.447 |
27DAP/reference | 0.88529 | 0.171 |
39DAP/reference | 0.84852 | 0.126 |
41DAP/reference | 1.04647 | 0.864 |
42DAP/reference | 1.05447 | 0.889 |
43DAP/reference | 0.97084 | 0.459 |
47DAP/reference | 1.02958 | 0.996 |
52DAP/reference | 0.90931 | 0.196 |
57DAP/reference | 0.98646 | 0.549 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.15764 | 0.056 |
17DAP/reference | 1.43214 | 0.007 |
27DAP/reference | 1.14888 | 0.203 |
39DAP/reference | 1.11029 | 0.436 |
41DAP/reference | 0.99803 | 0.584 |
42DAP/reference | 0.93947 | 0.189 |
43DAP/reference | 1.25041 | 0.082 |
47DAP/reference | 1.07124 | 0.527 |
52DAP/reference | 1.16909 | 0.041 |
57DAP/reference | 1.47858 | 0.012 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.14523 | 0.691 |
17DAP/reference | 1.10241 | 0.631 |
27DAP/reference | 1.10546 | 0.271 |
39DAP/reference | 1.03439 | 1 |
41DAP/reference | 0.95045 | 0.293 |
42DAP/reference | 0.87084 | 0.108 |
43DAP/reference | 1.08792 | 0.555 |
47DAP/reference | 0.88775 | 0.125 |
52DAP/reference | 0.86702 | 0.118 |
57DAP/reference | 0.69104 | 0.02 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.13902 | 0.966 |
26DAP/20DAP | 1.03883 | 1 |
34DAP/26DAP | 0.89695 | 0.841 |
51DAP/34DAP | 1.0167 | 0.946 |
52DAP/51DAP | 1.06009 | 0.939 |
53DAP/52DAP | 0.65448 | 0.128 |
55DAP/53DAP | 1.0358 | 0.876 |
57DAP/55DAP | 0.85147 | 0.333 |
62DAP/57DAP | 0.97492 | 0.994 |
68DAP/62DAP | 0.6948 | 0.044 |
68DAP/14DAP | 0.60303 | 0.075 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.18272 | 0.306 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.68112 | 0.051 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.52187 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.3335 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.85853 | 0.25 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.79696 | |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 0.98961 | |
5-3/M82 | 0.97899 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | 2.01708 | |
7-2/M82 | 1.13589 | |
9-3-2/M82 | 0.98513 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.13618 | 0.365 |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | 1.04873 | 1 |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.77498 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.04571 | 0.921 |
DC3000/delta hrp 6h | 1.03372 | 1 |
DC3000/delta hrp 12h | 1.00615 | 1 |
DC3000/delta hrp 24h | 1.21995 | 0.336 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.56763 | 0.023 |
DC3000 delta B/DC3000 delta AB | 0.47507 | 0.02 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.07115 | 1 |
Exp 36h | 1.14404 | 0.693 |
Exp 60h | 1.33798 | 0.22 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.97749 | 1 |
Var 0h | 1.16364 | 0.782 |
Var 12h I row2-row1 | 0.74126 | 0.344 |
Var 12h NI row2-row1 | 1.11774 | 1 |
Var 36h I row2-row1 | 0.73911 | 0.805 |
Var 36h NI row2-row1 | 7.28883 | 1 |
Var 60h I row2-row1 | 1.28601 | 0.562 |
Var 60h NI row2-row1 | 0.97471 | 1 |
Time course 0hI-0hNI | 1.01126 | 1 |
Time course 12hI-12hNI | 0.99953 | 1 |
Time course 36hI-36hNI | 0.97124 | 0.46 |
Time course 60hI-60hNI | 0.23363 | 0.005 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.97514 | 0.348 |
transgenic ySAMdc/azygous control (breaker) | 0.78172 | 0.139 |
transgenic ySAMdc/azygous control (red) | 0.88561 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.00182 | 1 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.84573 | 0.255 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.04215 | 0.14 |
Manapal/WT (break) | 0.81893 | 1 |
Manapal/WT (red) | 0.9282 | 0.728 |
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