Expression of 1-1-2.4.16.8

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.87310.617
27DAP/17DAP3.099880.383
39DAP/27DAP0.871090.652
41DAP/39DAP1.122981
42DAP/41DAP0.617130.774
43DAP/42DAP1.320311
47DAP/43DAP1.638280.756
52DAP/47DAP1.617150.605
57DAP/52DAP1.262160.95

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.490590.179
17DAP/reference1.411430.011
27DAP/reference0.928230.623
39DAP/reference1.168110.679
41DAP/reference1.729960.05
42DAP/reference1.208780.08
43DAP/referenceN/AN/A
47DAP/reference0.940560.445
52DAP/reference0.40494
57DAP/referenceN/AN/A

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.515230.078
27DAP/17DAP0.79174
39DAP/27DAP0.94513
41DAP/39DAP4.053720.876
42DAP/41DAP1.320330.935
43DAP/42DAPN/AN/A
47DAP/43DAP1.40715
52DAP/47DAP0.960720.893
57DAP/52DAPN/AN/A
57DAP/7DAP1.01646

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.30994
17DAP/reference1.34252
27DAP/reference0.89106
39DAP/reference1.316390.634
41DAP/reference1.04349
42DAP/reference1.79741
43DAP/referenceN/AN/A
47DAP/referenceN/AN/A
52DAP/reference0.43852
57DAP/reference0.82870.411

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.802780.318
17DAP/reference0.677310.01
27DAP/reference0.916530.423
39DAP/reference1.296060.194
41DAP/reference1.724650.025
42DAP/reference0.922490.482
43DAP/reference0.743750.132
47DAP/reference1.887220.556
52DAP/reference0.860510.055
57DAP/reference0.828540.125

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.85126
17DAP/referenceN/AN/A
27DAP/referenceN/AN/A
39DAP/referenceN/AN/A
41DAP/referenceN/AN/A
42DAP/reference3.05945
43DAP/reference1.461370.744
47DAP/referenceN/AN/A
52DAP/referenceN/AN/A
57DAP/referenceN/AN/A

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.863431
26DAP/20DAPN/AN/A
34DAP/26DAP0.841610.811
51DAP/34DAP1.68270.387
52DAP/51DAP0.543590.151
53DAP/52DAP1.149450.806
55DAP/53DAP1.090750.855
57DAP/55DAPN/AN/A
62DAP/57DAP1.908160.002
68DAP/62DAPN/AN/A
68DAP/14DAP1.02258

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.857340.322

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooledN/AN/A
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0hN/AN/A
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h0.63648
DC3000/delta hrp 24h1.328860.069

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h0.935540.933
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)1.366990.381
Manapal/WT (red)N/AN/A