Expression of 1-1-2.4.17.16
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.98845 | 0.699 |
27DAP/17DAP | 0.80285 | 0.536 |
39DAP/27DAP | 2.50965 | 0.121 |
41DAP/39DAP | 1.11186 | 0.722 |
42DAP/41DAP | 0.85657 | 0.774 |
43DAP/42DAP | 0.80226 | 0.613 |
47DAP/43DAP | 0.76893 | 0.33 |
52DAP/47DAP | 1.11088 | 0.964 |
57DAP/52DAP | 1.31028 | 0.977 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.01536 | 1 |
17DAP/reference | 1.14171 | 0.384 |
27DAP/reference | 0.96873 | 0.581 |
39DAP/reference | 1.18666 | 0.474 |
41DAP/reference | 0.95489 | 0.667 |
42DAP/reference | 0.94538 | 0.287 |
43DAP/reference | 1.19455 | 0.471 |
47DAP/reference | 0.86547 | 0.071 |
52DAP/reference | 0.96132 | 0.461 |
57DAP/reference | 1.13142 | 0.621 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.8376 | 0.164 |
27DAP/17DAP | 1.15785 | 0.61 |
39DAP/27DAP | 1.13413 | 0.28 |
41DAP/39DAP | 1.18598 | 0.355 |
42DAP/41DAP | 0.94959 | 0.603 |
43DAP/42DAP | 1.78123 | 0.018 |
47DAP/43DAP | 1.71705 | 0.013 |
52DAP/47DAP | 0.78136 | 0.156 |
57DAP/52DAP | 1.06005 | 1 |
57DAP/7DAP | 1.92056 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.65869 | 0.058 |
17DAP/reference | 0.83226 | 0.064 |
27DAP/reference | 0.79443 | 0.013 |
39DAP/reference | 0.65076 | 0.023 |
41DAP/reference | 0.6865 | 0.021 |
42DAP/reference | 0.7295 | 0.013 |
43DAP/reference | 0.76926 | 0.091 |
47DAP/reference | 0.83094 | 0.168 |
52DAP/reference | 0.72841 | 0.09 |
57DAP/reference | 0.79262 | 0.059 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.91903 | 0.623 |
17DAP/reference | 0.86578 | 0.41 |
27DAP/reference | 0.79451 | 0.05 |
39DAP/reference | 1.027 | 0.745 |
41DAP/reference | 0.91489 | 0.348 |
42DAP/reference | 1.19276 | 0.61 |
43DAP/reference | 1.16242 | 0.809 |
47DAP/reference | 0.83292 | 0.071 |
52DAP/reference | 1.01976 | 1 |
57DAP/reference | 0.96333 | 0.61 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.7955 | 0.03 |
17DAP/reference | 0.90879 | 0.499 |
27DAP/reference | 0.83894 | 0.06 |
39DAP/reference | 0.87552 | 0.179 |
41DAP/reference | 0.85866 | 0.064 |
42DAP/reference | 0.98024 | 0.671 |
43DAP/reference | 0.83276 | 0.12 |
47DAP/reference | 1.00087 | 0.687 |
52DAP/reference | 1.1921 | 1 |
57DAP/reference | 0.93123 | 0.366 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.73803 | 0.012 |
26DAP/20DAP | 0.69528 | 0.317 |
34DAP/26DAP | 0.92633 | 0.893 |
51DAP/34DAP | 0.6986 | 0.093 |
52DAP/51DAP | 1.04753 | 0.708 |
53DAP/52DAP | 1.16638 | 0.537 |
55DAP/53DAP | 1.09149 | 1 |
57DAP/55DAP | 1.27611 | 0.694 |
62DAP/57DAP | 0.90405 | 0.871 |
68DAP/62DAP | 0.99821 | 0.885 |
68DAP/14DAP | 1.67704 | 0.047 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 2.72617 | 0.049 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.08753 | 0.016 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 10.3321 | 1 |
Mature Eggplant/Ripe Tomato | 0.40483 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.06391 | 0.877 |
1-1-2/M82 | 1.29189 | 1 |
12-2/M82 | 1.27579 | 1 |
12-4/M82 | 0.64587 | 0.358 |
1-3/M82 | 2.49311 | 0.248 |
2-1-1/M82 | 0.95186 | 1 |
2-1/M82 | 0.8472 | |
2-6/M82 | 1.51043 | 0.505 |
3-2/M82 | 0.5546 | 0.451 |
4-1-1/M82 | 1.93807 | 0.968 |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 1.48389 | 1 |
5-3/M82 | 1.26235 | 1 |
6-2/M82 | 1.18685 | 1 |
6-3/M82 | 1.08108 | 1 |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.95613 | 1 |
IL2-6/WTpooled | 0.91695 | 1 |
IL7-5/WTpooled | 1.03078 | 1 |
IL7-3/WTpooled | 0.99181 | 1 |
IL12-4/WTpooled | 1.01678 | 1 |
IL1-4/WTpooled | 1.0296 | 1 |
WT/WTpooled | 0.96719 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.12808 | 0.699 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.99313 | 1 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 1.1111 | 1 |
DC3000/delta hrp 24h | 0.99534 | 1 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.59434 | |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.02008 | 1 |
Var 0h | 1.19006 | 0.98 |
Var 12h I row2-row1 | 0.91798 | 0.467 |
Var 12h NI row2-row1 | 0.79936 | 0.494 |
Var 36h I row2-row1 | 0.95926 | 1 |
Var 36h NI row2-row1 | 0.99396 | 0.852 |
Var 60h I row2-row1 | 1.07843 | 0.562 |
Var 60h NI row2-row1 | 1.02745 | 1 |
Time course 0hI-0hNI | 0.99423 | 1 |
Time course 12hI-12hNI | 0.99454 | 1 |
Time course 36hI-36hNI | 0.94022 | 0.179 |
Time course 60hI-60hNI | 0.66981 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | N/A | N/A |
transgenic ySAMdc/azygous control (red) | N/A | N/A |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.72543 | 0.237 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.82209 | 0.172 |
Manapal/WT (break) | 1.51273 | 0.381 |
Manapal/WT (red) | 0.84904 | 0.242 |
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