Expression of 1-1-2.4.17.16

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.988450.699
27DAP/17DAP0.802850.536
39DAP/27DAP2.509650.121
41DAP/39DAP1.111860.722
42DAP/41DAP0.856570.774
43DAP/42DAP0.802260.613
47DAP/43DAP0.768930.33
52DAP/47DAP1.110880.964
57DAP/52DAP1.310280.977

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.015361
17DAP/reference1.141710.384
27DAP/reference0.968730.581
39DAP/reference1.186660.474
41DAP/reference0.954890.667
42DAP/reference0.945380.287
43DAP/reference1.194550.471
47DAP/reference0.865470.071
52DAP/reference0.961320.461
57DAP/reference1.131420.621

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.83760.164
27DAP/17DAP1.157850.61
39DAP/27DAP1.134130.28
41DAP/39DAP1.185980.355
42DAP/41DAP0.949590.603
43DAP/42DAP1.781230.018
47DAP/43DAP1.717050.013
52DAP/47DAP0.781360.156
57DAP/52DAP1.060051
57DAP/7DAP1.920561

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.658690.058
17DAP/reference0.832260.064
27DAP/reference0.794430.013
39DAP/reference0.650760.023
41DAP/reference0.68650.021
42DAP/reference0.72950.013
43DAP/reference0.769260.091
47DAP/reference0.830940.168
52DAP/reference0.728410.09
57DAP/reference0.792620.059

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.919030.623
17DAP/reference0.865780.41
27DAP/reference0.794510.05
39DAP/reference1.0270.745
41DAP/reference0.914890.348
42DAP/reference1.192760.61
43DAP/reference1.162420.809
47DAP/reference0.832920.071
52DAP/reference1.019761
57DAP/reference0.963330.61

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.79550.03
17DAP/reference0.908790.499
27DAP/reference0.838940.06
39DAP/reference0.875520.179
41DAP/reference0.858660.064
42DAP/reference0.980240.671
43DAP/reference0.832760.12
47DAP/reference1.000870.687
52DAP/reference1.19211
57DAP/reference0.931230.366

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.738030.012
26DAP/20DAP0.695280.317
34DAP/26DAP0.926330.893
51DAP/34DAP0.69860.093
52DAP/51DAP1.047530.708
53DAP/52DAP1.166380.537
55DAP/53DAP1.091491
57DAP/55DAP1.276110.694
62DAP/57DAP0.904050.871
68DAP/62DAP0.998210.885
68DAP/14DAP1.677040.047

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker2.726170.049

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.087530.016
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato10.33211
Mature Eggplant/Ripe Tomato0.404831

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.063910.877
1-1-2/M821.291891
12-2/M821.275791
12-4/M820.645870.358
1-3/M822.493110.248
2-1-1/M820.951861
2-1/M820.8472
2-6/M821.510430.505
3-2/M820.55460.451
4-1-1/M821.938070.968
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M821.483891
5-3/M821.262351
6-2/M821.186851
6-3/M821.081081
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.956131
IL2-6/WTpooled0.916951
IL7-5/WTpooled1.030781
IL7-3/WTpooled0.991811
IL12-4/WTpooled1.016781
IL1-4/WTpooled1.02961
WT/WTpooled0.967191

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.128080.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.993131
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.11111
DC3000/delta hrp 24h0.995341

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.59434
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.020081
Var 0h1.190060.98
Var 12h I row2-row10.917980.467
Var 12h NI row2-row10.799360.494
Var 36h I row2-row10.959261
Var 36h NI row2-row10.993960.852
Var 60h I row2-row11.078430.562
Var 60h NI row2-row11.027451
Time course 0hI-0hNI0.994231
Time course 12hI-12hNI0.994541
Time course 36hI-36hNI0.940220.179
Time course 60hI-60hNI0.669810.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.725430.237

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.822090.172
Manapal/WT (break)1.512730.381
Manapal/WT (red)0.849040.242