Tomato Functional Genomics Database (TFGD)

Expression of 1-1-2.4.18.3

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.00333	0.901
27DAP/17DAP	1.07354	0.895
39DAP/27DAP	0.95077	0.663
41DAP/39DAP	0.82908	0.558
42DAP/41DAP	0.82811	1
43DAP/42DAP	0.84465	0.695
47DAP/43DAP	1.03867	0.856
52DAP/47DAP	0.97741	0.837
57DAP/52DAP	1.30536	0.935

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.97751	0.562
17DAP/reference	1.17141	0.27
27DAP/reference	0.98781	0.694
39DAP/reference	1.06075	0.654
41DAP/reference	0.97455	0.667
42DAP/reference	0.96846	0.315
43DAP/reference	0.92095	0.36
47DAP/reference	1.05166	0.708
52DAP/reference	1.11043	0.371
57DAP/reference	0.99126	0.58

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.09084	0.762
27DAP/17DAP	0.98379	0.943
39DAP/27DAP	0.92735	0.648
41DAP/39DAP	1.16697	0.849
42DAP/41DAP	1.13104	0.927
43DAP/42DAP	1.13368	0.788
47DAP/43DAP	0.97796	0.896
52DAP/47DAP	1.40351	0.386
57DAP/52DAP	1.02755	0.845
57DAP/7DAP	1.49739	1

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.05942	0.857
17DAP/reference	0.89373	0.072
27DAP/reference	0.85163	0.058
39DAP/reference	0.79346	0.021
41DAP/reference	0.83675	0.166
42DAP/reference	0.79545	0.073
43DAP/reference	0.92127	0.279
47DAP/reference	0.74983	0.293
52DAP/reference	0.90592	0.038
57DAP/reference	0.90518	0.036

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.98196	0.811
17DAP/reference	0.92843	0.039
27DAP/reference	0.65008	0.069
39DAP/reference	1.20755	0.263
41DAP/reference	1.15675	0.737
42DAP/reference	0.94512	0.321
43DAP/reference	1.05598	0.809
47DAP/reference	0.92787	0.246
52DAP/reference	0.91956	0.093
57DAP/reference	1.0875	0.324

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.05864	0.644
17DAP/reference	0.87758	0.308
27DAP/reference	1.06609	0.531
39DAP/reference	0.92935	0.163
41DAP/reference	0.87914	0.064
42DAP/reference	0.87252	0.041
43DAP/reference	0.9417	0.432
47DAP/reference	0.94509	0.325
52DAP/reference	0.88702	0.368
57DAP/reference	0.95522	0.41

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	1.17484	0.966
26DAP/20DAP	0.99961	1
34DAP/26DAP	1.11453	1
51DAP/34DAP	0.77151	0.147
52DAP/51DAP	1.37043	0.218
53DAP/52DAP	0.91277	0.587
55DAP/53DAP	1.32143	0.301
57DAP/55DAP	0.98129	0.909
62DAP/57DAP	0.83197	0.162
68DAP/62DAP	0.9709	0.81
68DAP/14DAP	0.90412	1

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	0.57653	0.092

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	N/A	N/A
Immature Eggplant/Mature Eggplant	0.89373	0.808
Ripe Pepper/Ripe Tomato	N/A	N/A
Mature Eggplant/Ripe Tomato	N/A	N/A

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	N/A	N/A
1-3/M82	N/A	N/A
2-1-1/M82	N/A	N/A
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	N/A	N/A
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	N/A	N/A
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	N/A	N/A
7-2/M82	N/A	N/A
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	N/A	N/A
IL2-6/WTpooled	0.84347	0.473
IL7-5/WTpooled	0.47281
IL7-3/WTpooled	1.46382	1
IL12-4/WTpooled	1.16535	0.673
IL1-4/WTpooled	0.96559	1
WT/WTpooled	0.96487	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	1.16923

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	0.95435	1
DC3000/delta hrp 6h	N/A	N/A
DC3000/delta hrp 12h	0.90541	1
DC3000/delta hrp 24h	1.02443	1

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	0.85808	1
Exp 36h	N/A	N/A
Exp 60h	0.88779	0.586

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	1.11416	1
Var 0h	4.55701	1
Var 12h I row2-row1	1.01743	0.795
Var 12h NI row2-row1	1.57515	1
Var 36h I row2-row1	1.03505	1
Var 36h NI row2-row1	0.64656	0.61
Var 60h I row2-row1	0.92228	0.582
Var 60h NI row2-row1	0.59283	1
Time course 0hI-0hNI	0.86493	1
Time course 12hI-12hNI	1.07308	0.682
Time course 36hI-36hNI	1.05788	0.975
Time course 60hI-60hNI	1.52185	0.302

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	1.0453	0.571
transgenic ySAMdc/azygous control (breaker)	1.04673	1
transgenic ySAMdc/azygous control (red)	0.9375	1

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	0.8853	0.049

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	0.93869	0.35

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	1.2863	0.307
Manapal/WT (break)	0.89357	1
Manapal/WT (red)	1.00611	1