Expression of 1-1-2.4.19.14

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.989650.689
27DAP/17DAP1.071130.994
39DAP/27DAP2.207120.105
41DAP/39DAP1.603090.238
42DAP/41DAP2.547850.019
43DAP/42DAP1.519270.854
47DAP/43DAP1.841580.377
52DAP/47DAP0.909410.694
57DAP/52DAP1.566820.904

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.15830.421
17DAP/reference1.276620.049
27DAP/reference1.082380.415
39DAP/reference1.00641
41DAP/reference1.279410.241
42DAP/reference1.185520.137
43DAP/reference1.229060.042
47DAP/reference1.368840.004
52DAP/reference1.296190.076
57DAP/reference1.325890.094

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.962610.578
27DAP/17DAP1.042140.852
39DAP/27DAP1.339030.14
41DAP/39DAP0.694920.022
42DAP/41DAP1.722180.003
43DAP/42DAP2.76930.014
47DAP/43DAP1.084810.844
52DAP/47DAP0.987280.907
57DAP/52DAP0.687210.113
57DAP/7DAP1.367480.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.861170.122
17DAP/reference1.233860.059
27DAP/reference1.502360.008
39DAP/reference1.462820.012
41DAP/reference1.910180.011
42DAP/reference1.803140.01
43DAP/reference1.350770.111
47DAP/reference1.175170.791
52DAP/reference1.399850.01
57DAP/reference1.223350.288

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.696570.009
17DAP/reference1.037880.92
27DAP/reference1.047731
39DAP/reference1.082270.489
41DAP/reference1.092441
42DAP/reference1.119610.214
43DAP/reference1.008730.62
47DAP/reference1.131920.4
52DAP/reference1.032510.619
57DAP/reference1.198360.252

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.03140.939
17DAP/reference1.135240.113
27DAP/reference1.468550.033
39DAP/reference1.47480.016
41DAP/reference1.361690.044
42DAP/reference1.388180.017
43DAP/reference1.433130.071
47DAP/reference1.372630.027
52DAP/reference1.670660.055
57DAP/reference1.096910.939

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.406980.966
26DAP/20DAP1.144660.504
34DAP/26DAP0.967960.927
51DAP/34DAP0.943290.66
52DAP/51DAP1.043510.733
53DAP/52DAP2.32540.03
55DAP/53DAP1.176940.076
57DAP/55DAP0.981670.859
62DAP/57DAP0.530610.05
68DAP/62DAP1.433030.367
68DAP/14DAP1.284330.103

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker3.651180.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.144170.017
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.29071
Mature Eggplant/Ripe Tomato0.061950.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.3650.742
1-1-2/M821.11391
12-2/M821.126431
12-4/M821.525721
1-3/M822.65588
2-1-1/M820.906790.465
2-1/M820.835220.519
2-6/M820.79247
3-2/M820.183630.44
4-1-1/M820.752491
4-1/M821.259821
4-3-2/M821.02961
4-3/M821.014311
5-3/M821.036321
6-2/M821.348181
6-3/M820.991011
7-1/M820.94691
7-2/M821.21609
9-3-2/M821.272711

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.714640.247
IL2-6/WTpooled1.160080.531
IL7-5/WTpooled1.12805
IL7-3/WTpooled2.09238
IL12-4/WTpooledN/AN/A
IL1-4/WTpooled0.712660.444
WT/WTpooled0.956661

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.86970.75

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.86240.839
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.063841
DC3000/delta hrp 24h0.630630.034

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.795890.027
DC3000 delta B/DC3000 delta AB0.810790.03

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.995771
Var 0h1.090350.782
Var 12h I row2-row10.951020.627
Var 12h NI row2-row11.040621
Var 36h I row2-row11.089780.601
Var 36h NI row2-row11.007711
Var 60h I row2-row10.851630.582
Var 60h NI row2-row11.044411
Time course 0hI-0hNI0.916830.478
Time course 12hI-12hNI0.981590.886
Time course 36hI-36hNI1.021610.799
Time course 60hI-60hNI0.612840.007

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)0.957681
transgenic ySAMdc/azygous control (red)0.983981

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.145220.223

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.384410.239

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)1.289121
Manapal/WT (red)1.852360.134