Expression of 1-1-2.4.19.14
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.98965 | 0.689 |
27DAP/17DAP | 1.07113 | 0.994 |
39DAP/27DAP | 2.20712 | 0.105 |
41DAP/39DAP | 1.60309 | 0.238 |
42DAP/41DAP | 2.54785 | 0.019 |
43DAP/42DAP | 1.51927 | 0.854 |
47DAP/43DAP | 1.84158 | 0.377 |
52DAP/47DAP | 0.90941 | 0.694 |
57DAP/52DAP | 1.56682 | 0.904 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.1583 | 0.421 |
17DAP/reference | 1.27662 | 0.049 |
27DAP/reference | 1.08238 | 0.415 |
39DAP/reference | 1.0064 | 1 |
41DAP/reference | 1.27941 | 0.241 |
42DAP/reference | 1.18552 | 0.137 |
43DAP/reference | 1.22906 | 0.042 |
47DAP/reference | 1.36884 | 0.004 |
52DAP/reference | 1.29619 | 0.076 |
57DAP/reference | 1.32589 | 0.094 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.96261 | 0.578 |
27DAP/17DAP | 1.04214 | 0.852 |
39DAP/27DAP | 1.33903 | 0.14 |
41DAP/39DAP | 0.69492 | 0.022 |
42DAP/41DAP | 1.72218 | 0.003 |
43DAP/42DAP | 2.7693 | 0.014 |
47DAP/43DAP | 1.08481 | 0.844 |
52DAP/47DAP | 0.98728 | 0.907 |
57DAP/52DAP | 0.68721 | 0.113 |
57DAP/7DAP | 1.36748 | 0.365 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.86117 | 0.122 |
17DAP/reference | 1.23386 | 0.059 |
27DAP/reference | 1.50236 | 0.008 |
39DAP/reference | 1.46282 | 0.012 |
41DAP/reference | 1.91018 | 0.011 |
42DAP/reference | 1.80314 | 0.01 |
43DAP/reference | 1.35077 | 0.111 |
47DAP/reference | 1.17517 | 0.791 |
52DAP/reference | 1.39985 | 0.01 |
57DAP/reference | 1.22335 | 0.288 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.69657 | 0.009 |
17DAP/reference | 1.03788 | 0.92 |
27DAP/reference | 1.04773 | 1 |
39DAP/reference | 1.08227 | 0.489 |
41DAP/reference | 1.09244 | 1 |
42DAP/reference | 1.11961 | 0.214 |
43DAP/reference | 1.00873 | 0.62 |
47DAP/reference | 1.13192 | 0.4 |
52DAP/reference | 1.03251 | 0.619 |
57DAP/reference | 1.19836 | 0.252 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.0314 | 0.939 |
17DAP/reference | 1.13524 | 0.113 |
27DAP/reference | 1.46855 | 0.033 |
39DAP/reference | 1.4748 | 0.016 |
41DAP/reference | 1.36169 | 0.044 |
42DAP/reference | 1.38818 | 0.017 |
43DAP/reference | 1.43313 | 0.071 |
47DAP/reference | 1.37263 | 0.027 |
52DAP/reference | 1.67066 | 0.055 |
57DAP/reference | 1.09691 | 0.939 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.40698 | 0.966 |
26DAP/20DAP | 1.14466 | 0.504 |
34DAP/26DAP | 0.96796 | 0.927 |
51DAP/34DAP | 0.94329 | 0.66 |
52DAP/51DAP | 1.04351 | 0.733 |
53DAP/52DAP | 2.3254 | 0.03 |
55DAP/53DAP | 1.17694 | 0.076 |
57DAP/55DAP | 0.98167 | 0.859 |
62DAP/57DAP | 0.53061 | 0.05 |
68DAP/62DAP | 1.43303 | 0.367 |
68DAP/14DAP | 1.28433 | 0.103 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 3.65118 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.14417 | 0.017 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.29071 | |
Mature Eggplant/Ripe Tomato | 0.06195 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.365 | 0.742 |
1-1-2/M82 | 1.1139 | 1 |
12-2/M82 | 1.12643 | 1 |
12-4/M82 | 1.52572 | 1 |
1-3/M82 | 2.65588 | |
2-1-1/M82 | 0.90679 | 0.465 |
2-1/M82 | 0.83522 | 0.519 |
2-6/M82 | 0.79247 | |
3-2/M82 | 0.18363 | 0.44 |
4-1-1/M82 | 0.75249 | 1 |
4-1/M82 | 1.25982 | 1 |
4-3-2/M82 | 1.0296 | 1 |
4-3/M82 | 1.01431 | 1 |
5-3/M82 | 1.03632 | 1 |
6-2/M82 | 1.34818 | 1 |
6-3/M82 | 0.99101 | 1 |
7-1/M82 | 0.9469 | 1 |
7-2/M82 | 1.21609 | |
9-3-2/M82 | 1.27271 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.71464 | 0.247 |
IL2-6/WTpooled | 1.16008 | 0.531 |
IL7-5/WTpooled | 1.12805 | |
IL7-3/WTpooled | 2.09238 | |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | 0.71266 | 0.444 |
WT/WTpooled | 0.95666 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.8697 | 0.75 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.8624 | 0.839 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 1.06384 | 1 |
DC3000/delta hrp 24h | 0.63063 | 0.034 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.79589 | 0.027 |
DC3000 delta B/DC3000 delta AB | 0.81079 | 0.03 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99577 | 1 |
Var 0h | 1.09035 | 0.782 |
Var 12h I row2-row1 | 0.95102 | 0.627 |
Var 12h NI row2-row1 | 1.04062 | 1 |
Var 36h I row2-row1 | 1.08978 | 0.601 |
Var 36h NI row2-row1 | 1.00771 | 1 |
Var 60h I row2-row1 | 0.85163 | 0.582 |
Var 60h NI row2-row1 | 1.04441 | 1 |
Time course 0hI-0hNI | 0.91683 | 0.478 |
Time course 12hI-12hNI | 0.98159 | 0.886 |
Time course 36hI-36hNI | 1.02161 | 0.799 |
Time course 60hI-60hNI | 0.61284 | 0.007 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | 0.95768 | 1 |
transgenic ySAMdc/azygous control (red) | 0.98398 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.14522 | 0.223 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.38441 | 0.239 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | 1.28912 | 1 |
Manapal/WT (red) | 1.85236 | 0.134 |
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