Expression of 1-1-2.4.19.18
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.9499 | 0.743 |
27DAP/17DAP | 1.26097 | 0.847 |
39DAP/27DAP | 1.54422 | 0.212 |
41DAP/39DAP | 0.94069 | 0.777 |
42DAP/41DAP | 1.07773 | 0.997 |
43DAP/42DAP | 1.04295 | 0.937 |
47DAP/43DAP | 0.93418 | 0.625 |
52DAP/47DAP | 1.14971 | 0.964 |
57DAP/52DAP | 0.7939 | 0.803 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.12399 | 0.089 |
17DAP/reference | 1.15532 | 0.024 |
27DAP/reference | 1.00061 | 0.847 |
39DAP/reference | 1.0345 | 0.615 |
41DAP/reference | 1.18291 | 0.05 |
42DAP/reference | 1.03211 | 0.449 |
43DAP/reference | 0.99433 | 0.861 |
47DAP/reference | 0.96539 | 0.258 |
52DAP/reference | 0.96437 | 0.35 |
57DAP/reference | 0.88301 | 0.014 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.92571 | 0.509 |
27DAP/17DAP | 0.91843 | 0.614 |
39DAP/27DAP | 1.11492 | 0.519 |
41DAP/39DAP | 0.91529 | 0.465 |
42DAP/41DAP | 1.14097 | 0.622 |
43DAP/42DAP | 1.08865 | 0.297 |
47DAP/43DAP | 0.84368 | 0.075 |
52DAP/47DAP | 1.04745 | 0.851 |
57DAP/52DAP | 0.95054 | 0.66 |
57DAP/7DAP | 1.06062 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.8926 | 0.095 |
17DAP/reference | 0.72278 | 0.014 |
27DAP/reference | 0.71744 | 0.01 |
39DAP/reference | 0.85503 | 0.049 |
41DAP/reference | 0.87383 | 0.062 |
42DAP/reference | 0.80872 | 0.034 |
43DAP/reference | 0.82711 | 0.061 |
47DAP/reference | 0.76867 | 0.079 |
52DAP/reference | 0.76527 | 0.012 |
57DAP/reference | 0.69227 | 0.007 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.23404 | 0.047 |
17DAP/reference | 1.23738 | 0.05 |
27DAP/reference | 1.04871 | 0.961 |
39DAP/reference | 1.20622 | 0.119 |
41DAP/reference | 0.959 | 0.277 |
42DAP/reference | 1.01472 | 1 |
43DAP/reference | 1.07943 | 0.522 |
47DAP/reference | 0.96968 | 0.292 |
52DAP/reference | 1.12498 | 0.061 |
57DAP/reference | 1.30366 | 0.018 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.89302 | 0.214 |
17DAP/reference | 0.97705 | 0.624 |
27DAP/reference | 0.8012 | 0.046 |
39DAP/reference | 0.72835 | 0.029 |
41DAP/reference | 0.79724 | 0.024 |
42DAP/reference | 0.69714 | 0.023 |
43DAP/reference | 0.70145 | 0.022 |
47DAP/reference | 0.95706 | 0.409 |
52DAP/reference | 0.65213 | 0.072 |
57DAP/reference | 0.5765 | 0.016 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.97779 | 1 |
26DAP/20DAP | 0.81534 | 0.317 |
34DAP/26DAP | 0.99397 | 1 |
51DAP/34DAP | 0.66976 | 0.116 |
52DAP/51DAP | 1.15526 | 0.534 |
53DAP/52DAP | 0.9462 | 0.79 |
55DAP/53DAP | 1.21288 | 0.733 |
57DAP/55DAP | 1.03122 | 0.986 |
62DAP/57DAP | 1.03952 | 1 |
68DAP/62DAP | 0.70527 | 0.245 |
68DAP/14DAP | 0.79687 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.92566 | 0.285 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 2.54525 | 0.176 |
Mature Green Tomato/Ripe Tomato | 1.15986 | 0.715 |
Immature Eggplant/Mature Eggplant | 1.01937 | 1 |
Ripe Pepper/Ripe Tomato | 0.60625 | |
Mature Eggplant/Ripe Tomato | 0.05132 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.00409 | 1 |
1-1-2/M82 | 0.90047 | 1 |
12-2/M82 | 0.89913 | 0.639 |
12-4/M82 | 1.17797 | 1 |
1-3/M82 | 0.52266 | |
2-1-1/M82 | 1.26564 | 0.764 |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.16267 | 0.505 |
3-2/M82 | 1.08145 | |
4-1-1/M82 | 0.76508 | |
4-1/M82 | 1.20829 | |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 0.61674 | 0.46 |
5-3/M82 | 0.8644 | 0.447 |
6-2/M82 | 1.09756 | |
6-3/M82 | 0.89865 | 1 |
7-1/M82 | 0.71187 | |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.02794 | 0.277 |
IL2-6/WTpooled | 0.85831 | 0.383 |
IL7-5/WTpooled | 1.34579 | 0.792 |
IL7-3/WTpooled | 1.01544 | 1 |
IL12-4/WTpooled | 1.34771 | 0.523 |
IL1-4/WTpooled | 0.97101 | 1 |
WT/WTpooled | 1.02492 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.01311 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.98199 | 1 |
DC3000/delta hrp 6h | 1.00125 | 0.95 |
DC3000/delta hrp 12h | 1.03419 | 1 |
DC3000/delta hrp 24h | 1.00938 | 0.84 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.83542 | 1 |
Exp 36h | 0.99021 | 0.943 |
Exp 60h | 0.90995 | 0.754 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.95668 | |
Var 0h | 1.07685 | 0.936 |
Var 12h I row2-row1 | 1.13013 | 0.283 |
Var 12h NI row2-row1 | 0.70272 | 0.438 |
Var 36h I row2-row1 | 0.99537 | 1 |
Var 36h NI row2-row1 | 1.16682 | 1 |
Var 60h I row2-row1 | 0.86732 | 0.285 |
Var 60h NI row2-row1 | 1.30901 | 0.701 |
Time course 0hI-0hNI | 1.07033 | 0.799 |
Time course 12hI-12hNI | 1.05315 | 0.593 |
Time course 36hI-36hNI | 0.94374 | 0.317 |
Time course 60hI-60hNI | 0.92599 | 0.319 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.9028 | 0.33 |
transgenic ySAMdc/azygous control (breaker) | 1.05857 | 1 |
transgenic ySAMdc/azygous control (red) | 0.98297 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.98153 | 0.517 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.59417 | 0.227 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.31766 | 0.14 |
Manapal/WT (break) | 1.10322 | 1 |
Manapal/WT (red) | 0.74255 | 0.229 |
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