Expression of 1-1-2.4.19.18

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.94990.743
27DAP/17DAP1.260970.847
39DAP/27DAP1.544220.212
41DAP/39DAP0.940690.777
42DAP/41DAP1.077730.997
43DAP/42DAP1.042950.937
47DAP/43DAP0.934180.625
52DAP/47DAP1.149710.964
57DAP/52DAP0.79390.803

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.123990.089
17DAP/reference1.155320.024
27DAP/reference1.000610.847
39DAP/reference1.03450.615
41DAP/reference1.182910.05
42DAP/reference1.032110.449
43DAP/reference0.994330.861
47DAP/reference0.965390.258
52DAP/reference0.964370.35
57DAP/reference0.883010.014

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.925710.509
27DAP/17DAP0.918430.614
39DAP/27DAP1.114920.519
41DAP/39DAP0.915290.465
42DAP/41DAP1.140970.622
43DAP/42DAP1.088650.297
47DAP/43DAP0.843680.075
52DAP/47DAP1.047450.851
57DAP/52DAP0.950540.66
57DAP/7DAP1.060621

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.89260.095
17DAP/reference0.722780.014
27DAP/reference0.717440.01
39DAP/reference0.855030.049
41DAP/reference0.873830.062
42DAP/reference0.808720.034
43DAP/reference0.827110.061
47DAP/reference0.768670.079
52DAP/reference0.765270.012
57DAP/reference0.692270.007

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.234040.047
17DAP/reference1.237380.05
27DAP/reference1.048710.961
39DAP/reference1.206220.119
41DAP/reference0.9590.277
42DAP/reference1.014721
43DAP/reference1.079430.522
47DAP/reference0.969680.292
52DAP/reference1.124980.061
57DAP/reference1.303660.018

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.893020.214
17DAP/reference0.977050.624
27DAP/reference0.80120.046
39DAP/reference0.728350.029
41DAP/reference0.797240.024
42DAP/reference0.697140.023
43DAP/reference0.701450.022
47DAP/reference0.957060.409
52DAP/reference0.652130.072
57DAP/reference0.57650.016

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.977791
26DAP/20DAP0.815340.317
34DAP/26DAP0.993971
51DAP/34DAP0.669760.116
52DAP/51DAP1.155260.534
53DAP/52DAP0.94620.79
55DAP/53DAP1.212880.733
57DAP/55DAP1.031220.986
62DAP/57DAP1.039521
68DAP/62DAP0.705270.245
68DAP/14DAP0.796870.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.925660.285

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper2.545250.176
Mature Green Tomato/Ripe Tomato1.159860.715
Immature Eggplant/Mature Eggplant1.019371
Ripe Pepper/Ripe Tomato0.60625
Mature Eggplant/Ripe Tomato0.05132

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.004091
1-1-2/M820.900471
12-2/M820.899130.639
12-4/M821.177971
1-3/M820.52266
2-1-1/M821.265640.764
2-1/M82N/AN/A
2-6/M821.162670.505
3-2/M821.08145
4-1-1/M820.76508
4-1/M821.20829
4-3-2/M82N/AN/A
4-3/M820.616740.46
5-3/M820.86440.447
6-2/M821.09756
6-3/M820.898651
7-1/M820.71187
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.027940.277
IL2-6/WTpooled0.858310.383
IL7-5/WTpooled1.345790.792
IL7-3/WTpooled1.015441
IL12-4/WTpooled1.347710.523
IL1-4/WTpooled0.971011
WT/WTpooled1.024921

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.013111

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.981991
DC3000/delta hrp 6h1.001250.95
DC3000/delta hrp 12h1.034191
DC3000/delta hrp 24h1.009380.84

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.835421
Exp 36h0.990210.943
Exp 60h0.909950.754

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.95668
Var 0h1.076850.936
Var 12h I row2-row11.130130.283
Var 12h NI row2-row10.702720.438
Var 36h I row2-row10.995371
Var 36h NI row2-row11.166821
Var 60h I row2-row10.867320.285
Var 60h NI row2-row11.309010.701
Time course 0hI-0hNI1.070330.799
Time course 12hI-12hNI1.053150.593
Time course 36hI-36hNI0.943740.317
Time course 60hI-60hNI0.925990.319

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.90280.33
transgenic ySAMdc/azygous control (breaker)1.058571
transgenic ySAMdc/azygous control (red)0.982971

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.981530.517

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.594170.227

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.317660.14
Manapal/WT (break)1.103221
Manapal/WT (red)0.742550.229