Expression of 1-1-2.4.19.19

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.865260.188
27DAP/17DAP1.326670.686
39DAP/27DAP4.890290.252
41DAP/39DAP2.777220.426
42DAP/41DAP0.871551
43DAP/42DAP1.250111
47DAP/43DAP0.194540.032
52DAP/47DAP1.216390.787
57DAP/52DAP0.730720.649

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.115790.334
17DAP/reference0.863280.138
27DAP/reference0.98080.683
39DAP/reference0.98940.816
41DAP/reference1.037891
42DAP/reference1.89490.001
43DAP/reference0.938670.331
47DAP/reference1.202980.069
52DAP/reference1.476010.158
57DAP/reference1.000890.845

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.666070.211
27DAP/17DAP0.986320.919
39DAP/27DAP4.820040.04
41DAP/39DAP5.510820.004
42DAP/41DAP0.538470.007
43DAP/42DAP0.277980.019
47DAP/43DAP1.062470.713
52DAP/47DAP1.100270.834
57DAP/52DAP0.37410.135
57DAP/7DAP1.273411

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.630230.077
17DAP/reference1.184220.971
27DAP/reference2.51480.197
39DAP/reference2.277150.149
41DAP/reference0.729640.049
42DAP/reference1.545690.889
43DAP/reference1.125380.48
47DAP/reference1.607660.133
52DAP/reference2.436530.016
57DAP/reference2.954170.017

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.968820.639
17DAP/reference0.971490.51
27DAP/reference1.253420.297
39DAP/reference1.818220.011
41DAP/reference1.589630.009
42DAP/reference1.880340.008
43DAP/reference3.230760.069
47DAP/reference3.165610.009
52DAP/reference0.966820.433
57DAP/reference2.890340.01

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.575890.054
17DAP/reference1.092020.855
27DAP/reference0.756880.053
39DAP/reference1.400690.12
41DAP/reference1.698910.056
42DAP/reference0.695280.087
43DAP/reference0.837820.179
47DAP/reference0.799790.043
52DAP/reference1.191520.781
57DAP/reference1.542820.147

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.092180.966
26DAP/20DAP0.708830.512
34DAP/26DAP1.246981
51DAP/34DAP0.794070.498
52DAP/51DAP1.240990.651
53DAP/52DAP0.996910.811
55DAP/53DAP1.237920.671
57DAP/55DAP1.022410.888
62DAP/57DAP0.768540.162
68DAP/62DAP1.089910.885
68DAP/14DAP0.959071

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker6.693320.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.006650.908
Mature Green Tomato/Ripe Tomato14.67750.015
Immature Eggplant/Mature Eggplant1.680160.05
Ripe Pepper/Ripe Tomato0.876151
Mature Eggplant/Ripe Tomato0.342691

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.508910.605
1-1-2/M821.414371
12-2/M821.128261
12-4/M821.270391
1-3/M822.537320.248
2-1-1/M820.57668
2-1/M823.02401
2-6/M821.54320.505
3-2/M825.200860.426
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M824.652150.508
4-3/M820.54353
5-3/M821.675740.426
6-2/M8211.13050.219
6-3/M821.110581
7-1/M820.18638
7-2/M822.28361
9-3-2/M823.055940.196

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.779360.243
IL2-6/WTpooled1.00701
IL7-5/WTpooled1.053051
IL7-3/WTpooled1.10956
IL12-4/WTpooled1.12383
IL1-4/WTpooled0.856930.562
WT/WTpooled1.114561

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.86081

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.271620.692
DC3000/delta hrp 6h0.922250.95
DC3000/delta hrp 12h1.078951
DC3000/delta hrp 24h2.776160.025

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB2.26154
DC3000 delta B/DC3000 delta AB4.159020.024

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.513780.254
Exp 36h1.450891
Exp 60h2.230940.227

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.002791
Var 0h1.002911
Var 12h I row2-row11.095440.736
Var 12h NI row2-row12.848290.191
Var 36h I row2-row11.450130.601
Var 36h NI row2-row10.43810.478
Var 60h I row2-row10.993831
Var 60h NI row2-row10.666190.63
Time course 0hI-0hNI2.054130.63
Time course 12hI-12hNI2.137320.567
Time course 36hI-36hNI10.76950.004
Time course 60hI-60hNI195.6960.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.389190.246
transgenic ySAMdc/azygous control (breaker)0.464690.118
transgenic ySAMdc/azygous control (red)1.032941

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.215280.04

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.229820.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.099090.14
Manapal/WT (break)0.643621
Manapal/WT (red)0.3910.315