Expression of 1-1-2.4.2.13
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.09058 | 0.997 |
27DAP/17DAP | 0.824 | 0.551 |
39DAP/27DAP | 1.04381 | 1 |
41DAP/39DAP | 0.54882 | 0.041 |
42DAP/41DAP | 0.5131 | 0.397 |
43DAP/42DAP | 0.63005 | 0.456 |
47DAP/43DAP | 0.38452 | 0.049 |
52DAP/47DAP | 1.52806 | 0.474 |
57DAP/52DAP | 1.20909 | 0.886 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 2.10851 | 0.006 |
17DAP/reference | 1.40902 | 0.369 |
27DAP/reference | 0.72828 | 0.026 |
39DAP/reference | 0.77366 | 0.016 |
41DAP/reference | 0.79399 | 0.031 |
42DAP/reference | 0.81212 | 0.001 |
43DAP/reference | 0.67255 | 0.015 |
47DAP/reference | 0.60666 | 0.001 |
52DAP/reference | 0.6363 | 0.014 |
57DAP/reference | 0.7631 | 0.013 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.78301 | 0.048 |
27DAP/17DAP | 1.03886 | 0.969 |
39DAP/27DAP | 0.38065 | 0.029 |
41DAP/39DAP | 1.39305 | 0.514 |
42DAP/41DAP | 0.84384 | 0.197 |
43DAP/42DAP | 0.67108 | 0.026 |
47DAP/43DAP | 0.84062 | 0.04 |
52DAP/47DAP | 0.91285 | 0.575 |
57DAP/52DAP | 1.23948 | 0.224 |
57DAP/7DAP | 0.43494 | 0.219 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 4.1636 | 0.024 |
17DAP/reference | 3.18645 | 0.006 |
27DAP/reference | 2.15834 | 0.007 |
39DAP/reference | 1.69774 | 0.005 |
41DAP/reference | 2.39865 | 0.008 |
42DAP/reference | 2.13232 | 0.011 |
43DAP/reference | 2.09138 | 0.007 |
47DAP/reference | 1.79031 | 0.014 |
52DAP/reference | 2.87443 | 0.007 |
57DAP/reference | 2.15565 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.93331 | 0.038 |
17DAP/reference | 2.55513 | 0.007 |
27DAP/reference | 2.65214 | 0.012 |
39DAP/reference | 1.77249 | 0.011 |
41DAP/reference | 1.92651 | 0.005 |
42DAP/reference | 1.96101 | 0.007 |
43DAP/reference | 0.93942 | 0.385 |
47DAP/reference | 1.51409 | 0.008 |
52DAP/reference | 1.47385 | 0.006 |
57DAP/reference | 0.73494 | 0.03 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 2.50207 | 0.015 |
17DAP/reference | 1.82695 | 0.111 |
27DAP/reference | 2.00956 | 0.014 |
39DAP/reference | 1.6034 | 0.008 |
41DAP/reference | 1.18748 | 0.031 |
42DAP/reference | 0.8113 | 0.014 |
43DAP/reference | 0.6848 | 0.016 |
47DAP/reference | 0.54841 | 0.005 |
52DAP/reference | 0.49499 | 0.047 |
57DAP/reference | 0.67188 | 0.016 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.02166 | 1 |
26DAP/20DAP | 2.66656 | 0.097 |
34DAP/26DAP | 0.67559 | 0.119 |
51DAP/34DAP | 1.1541 | 0.087 |
52DAP/51DAP | 0.93639 | 1 |
53DAP/52DAP | 1.12824 | 0.444 |
55DAP/53DAP | 0.74793 | 0.019 |
57DAP/55DAP | 1.33416 | 0.34 |
62DAP/57DAP | 0.71075 | 0.088 |
68DAP/62DAP | 1.26469 | 0.028 |
68DAP/14DAP | 1.24584 | 0.403 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.07317 | 0.415 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 2.46537 | 0.058 |
Mature Green Tomato/Ripe Tomato | 5.67065 | 0.015 |
Immature Eggplant/Mature Eggplant | 0.85064 | 0.084 |
Ripe Pepper/Ripe Tomato | 1.35553 | 0.258 |
Mature Eggplant/Ripe Tomato | 6.59554 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.45668 | |
1-1-2/M82 | 1.07902 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.66261 | 0.282 |
1-3/M82 | 0.54837 | |
2-1-1/M82 | 0.36318 | |
2-1/M82 | 0.84538 | |
2-6/M82 | 0.62664 | 0.501 |
3-2/M82 | N/A | N/A |
4-1-1/M82 | 0.79544 | 1 |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | 1.17101 | 1 |
6-2/M82 | 0.66201 | 0.497 |
6-3/M82 | 0.77358 | |
7-1/M82 | 0.94468 | |
7-2/M82 | 0.97061 | |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.0505 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.95779 | 1 |
IL12-4/WTpooled | 0.99346 | 1 |
IL1-4/WTpooled | 0.91604 | |
WT/WTpooled | 0.9954 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.7674 | 0.497 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.97915 | 1 |
DC3000/delta hrp 6h | 1.08677 | 0.95 |
DC3000/delta hrp 12h | 1.11616 | 1 |
DC3000/delta hrp 24h | 0.77294 | 0.042 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.67373 | 0.031 |
DC3000 delta B/DC3000 delta AB | 0.76944 | 0.037 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.81811 | 0.328 |
Exp 36h | 1.15776 | 1 |
Exp 60h | 0.85819 | 0.664 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.01139 | 1 |
Var 0h | 0.78208 | |
Var 12h I row2-row1 | 1.07299 | 0.736 |
Var 12h NI row2-row1 | 1.07011 | 1 |
Var 36h I row2-row1 | 1.02026 | 1 |
Var 36h NI row2-row1 | 0.88819 | 1 |
Var 60h I row2-row1 | 0.78357 | 0.374 |
Var 60h NI row2-row1 | 1.09067 | 0.904 |
Time course 0hI-0hNI | 0.95313 | 0.758 |
Time course 12hI-12hNI | 0.96605 | 0.761 |
Time course 36hI-36hNI | 0.789 | 0.033 |
Time course 60hI-60hNI | 0.53274 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.07442 | 0.748 |
transgenic ySAMdc/azygous control (breaker) | 0.35531 | 0.119 |
transgenic ySAMdc/azygous control (red) | 1.24881 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.10013 | 0.372 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.41821 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.41357 | 0.307 |
Manapal/WT (break) | 1.46212 | 0.381 |
Manapal/WT (red) | 2.14581 | 0.15 |
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