Expression of 1-1-2.4.2.13

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.090580.997
27DAP/17DAP0.8240.551
39DAP/27DAP1.043811
41DAP/39DAP0.548820.041
42DAP/41DAP0.51310.397
43DAP/42DAP0.630050.456
47DAP/43DAP0.384520.049
52DAP/47DAP1.528060.474
57DAP/52DAP1.209090.886

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference2.108510.006
17DAP/reference1.409020.369
27DAP/reference0.728280.026
39DAP/reference0.773660.016
41DAP/reference0.793990.031
42DAP/reference0.812120.001
43DAP/reference0.672550.015
47DAP/reference0.606660.001
52DAP/reference0.63630.014
57DAP/reference0.76310.013

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.783010.048
27DAP/17DAP1.038860.969
39DAP/27DAP0.380650.029
41DAP/39DAP1.393050.514
42DAP/41DAP0.843840.197
43DAP/42DAP0.671080.026
47DAP/43DAP0.840620.04
52DAP/47DAP0.912850.575
57DAP/52DAP1.239480.224
57DAP/7DAP0.434940.219

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference4.16360.024
17DAP/reference3.186450.006
27DAP/reference2.158340.007
39DAP/reference1.697740.005
41DAP/reference2.398650.008
42DAP/reference2.132320.011
43DAP/reference2.091380.007
47DAP/reference1.790310.014
52DAP/reference2.874430.007
57DAP/reference2.155650.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.933310.038
17DAP/reference2.555130.007
27DAP/reference2.652140.012
39DAP/reference1.772490.011
41DAP/reference1.926510.005
42DAP/reference1.961010.007
43DAP/reference0.939420.385
47DAP/reference1.514090.008
52DAP/reference1.473850.006
57DAP/reference0.734940.03

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.502070.015
17DAP/reference1.826950.111
27DAP/reference2.009560.014
39DAP/reference1.60340.008
41DAP/reference1.187480.031
42DAP/reference0.81130.014
43DAP/reference0.68480.016
47DAP/reference0.548410.005
52DAP/reference0.494990.047
57DAP/reference0.671880.016

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.021661
26DAP/20DAP2.666560.097
34DAP/26DAP0.675590.119
51DAP/34DAP1.15410.087
52DAP/51DAP0.936391
53DAP/52DAP1.128240.444
55DAP/53DAP0.747930.019
57DAP/55DAP1.334160.34
62DAP/57DAP0.710750.088
68DAP/62DAP1.264690.028
68DAP/14DAP1.245840.403

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.073170.415

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper2.465370.058
Mature Green Tomato/Ripe Tomato5.670650.015
Immature Eggplant/Mature Eggplant0.850640.084
Ripe Pepper/Ripe Tomato1.355530.258
Mature Eggplant/Ripe Tomato6.595540.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.45668
1-1-2/M821.07902
12-2/M82N/AN/A
12-4/M820.662610.282
1-3/M820.54837
2-1-1/M820.36318
2-1/M820.84538
2-6/M820.626640.501
3-2/M82N/AN/A
4-1-1/M820.795441
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M821.171011
6-2/M820.662010.497
6-3/M820.77358
7-1/M820.94468
7-2/M820.97061
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.05051
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.957791
IL12-4/WTpooled0.993461
IL1-4/WTpooled0.91604
WT/WTpooled0.99541

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.76740.497

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.979151
DC3000/delta hrp 6h1.086770.95
DC3000/delta hrp 12h1.116161
DC3000/delta hrp 24h0.772940.042

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.673730.031
DC3000 delta B/DC3000 delta AB0.769440.037

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.818110.328
Exp 36h1.157761
Exp 60h0.858190.664

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.011391
Var 0h0.78208
Var 12h I row2-row11.072990.736
Var 12h NI row2-row11.070111
Var 36h I row2-row11.020261
Var 36h NI row2-row10.888191
Var 60h I row2-row10.783570.374
Var 60h NI row2-row11.090670.904
Time course 0hI-0hNI0.953130.758
Time course 12hI-12hNI0.966050.761
Time course 36hI-36hNI0.7890.033
Time course 60hI-60hNI0.532740.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.074420.748
transgenic ySAMdc/azygous control (breaker)0.355310.119
transgenic ySAMdc/azygous control (red)1.248810.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.100130.372

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.418210.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.413570.307
Manapal/WT (break)1.462120.381
Manapal/WT (red)2.145810.15