Tomato Functional Genomics Database (TFGD)

Expression of 1-1-2.4.3.13

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.88579	0.486
27DAP/17DAP	0.92909	0.869
39DAP/27DAP	1.47568	0.312
41DAP/39DAP	0.67457	0.117
42DAP/41DAP	2.03014	0.059
43DAP/42DAP	1.06264	1
47DAP/43DAP	0.53267	0.049
52DAP/47DAP	1.22219	0.667
57DAP/52DAP	1.22605	0.93

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.2964	0.9
17DAP/reference	0.67077	0.053
27DAP/reference	0.7804	0.011
39DAP/reference	N/A	N/A
41DAP/reference	0.76101	0.341
42DAP/reference	N/A	N/A
43DAP/reference	0.51119	0.017
47DAP/reference	1.97784
52DAP/reference	6.82822
57DAP/reference	N/A	N/A

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.9202	0.644
27DAP/17DAP	1.1144	0.909
39DAP/27DAP	1.22035
41DAP/39DAP	0.84405	0.875
42DAP/41DAP	1.67396	0.727
43DAP/42DAP	N/A	N/A
47DAP/43DAP	1.28254	1
52DAP/47DAP	1.14973	0.619
57DAP/52DAP	0.53819	0.317
57DAP/7DAP	1.28597	1

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.0157	1
17DAP/reference	0.90517	0.082
27DAP/reference	0.91409	0.264
39DAP/reference	0.8841	0.126
41DAP/reference	1.03592	0.791
42DAP/reference	0.99858	0.506
43DAP/reference	0.89664	0.202
47DAP/reference	1.23714	0.837
52DAP/reference	0.91392	0.232
57DAP/reference	1.06034	1

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.65818	0.119
17DAP/reference	1.29968
27DAP/reference	1.34858	0.029
39DAP/reference	1.42677	0.052
41DAP/reference	1.09501	0.642
42DAP/reference	1.35076	0.136
43DAP/reference	1.19076	0.386
47DAP/reference	1.42527	0.008
52DAP/reference	0.98784
57DAP/reference	N/A	N/A

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.40962	0.347
17DAP/reference	1.08532	0.65
27DAP/reference	0.90422	0.041
39DAP/reference	0.79151	0.05
41DAP/reference	1.10633	0.486
42DAP/reference	1.7113	0.171
43DAP/reference	1.00404	0.503
47DAP/reference	N/A	N/A
52DAP/reference	0.7071	0.128
57DAP/reference	1.30342	0.239

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	0.76632	0.915
26DAP/20DAP	N/A	N/A
34DAP/26DAP	0.80015
51DAP/34DAP	1.0015
52DAP/51DAP	0.69464	0.151
53DAP/52DAP	0.85644	0.52
55DAP/53DAP	0.70913	0.21
57DAP/55DAP	1.36263
62DAP/57DAP	0.9195
68DAP/62DAP	N/A	N/A
68DAP/14DAP	2.60644

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	0.9643	0.665

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	0.54236	0.018
Immature Eggplant/Mature Eggplant	N/A	N/A
Ripe Pepper/Ripe Tomato	N/A	N/A
Mature Eggplant/Ripe Tomato	N/A	N/A

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	1.41982
12-2/M82	N/A	N/A
12-4/M82	N/A	N/A
1-3/M82	N/A	N/A
2-1-1/M82	N/A	N/A
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	0.98613
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	N/A	N/A
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	N/A	N/A
7-2/M82	N/A	N/A
9-3-2/M82	1.45361

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	0.95116	0.243
IL2-6/WTpooled	N/A	N/A
IL7-5/WTpooled	N/A	N/A
IL7-3/WTpooled	N/A	N/A
IL12-4/WTpooled	0.75101	0.71
IL1-4/WTpooled	N/A	N/A
WT/WTpooled	N/A	N/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	N/A	N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	N/A	N/A
DC3000/delta hrp 6h	N/A	N/A
DC3000/delta hrp 12h	N/A	N/A
DC3000/delta hrp 24h	N/A	N/A

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	N/A	N/A
Exp 36h	N/A	N/A
Exp 60h	N/A	N/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	N/A	N/A
Var 0h	N/A	N/A
Var 12h I row2-row1	N/A	N/A
Var 12h NI row2-row1	N/A	N/A
Var 36h I row2-row1	N/A	N/A
Var 36h NI row2-row1	N/A	N/A
Var 60h I row2-row1	N/A	N/A
Var 60h NI row2-row1	N/A	N/A
Time course 0hI-0hNI	N/A	N/A
Time course 12hI-12hNI	N/A	N/A
Time course 36hI-36hNI	N/A	N/A
Time course 60hI-60hNI	N/A	N/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	N/A	N/A
transgenic ySAMdc/azygous control (breaker)	N/A	N/A
transgenic ySAMdc/azygous control (red)	N/A	N/A

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	N/A	N/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	N/A	N/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	N/A	N/A
Manapal/WT (break)	N/A	N/A
Manapal/WT (red)	0.99717	1