Expression of 1-1-2.4.4.20
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.31046 | 0.224 |
27DAP/17DAP | 0.87062 | 0.694 |
39DAP/27DAP | 1.30079 | 0.575 |
41DAP/39DAP | 0.55259 | 0.041 |
42DAP/41DAP | 1.00255 | 1 |
43DAP/42DAP | 1.14521 | 1 |
47DAP/43DAP | 1.2491 | 0.584 |
52DAP/47DAP | 0.75427 | 0.43 |
57DAP/52DAP | 1.00549 | 0.983 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.23167 | 0.844 |
17DAP/reference | 0.76295 | 0.053 |
27DAP/reference | 0.77954 | 0.24 |
39DAP/reference | 0.65376 | 0.009 |
41DAP/reference | 0.64161 | 0.008 |
42DAP/reference | 0.96104 | 0.25 |
43DAP/reference | 0.73437 | |
47DAP/reference | 0.88461 | 0.207 |
52DAP/reference | 0.72981 | 0.012 |
57DAP/reference | N/A | N/A |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.04591 | 1 |
27DAP/17DAP | 0.98707 | 0.919 |
39DAP/27DAP | 1.09497 | 0.758 |
41DAP/39DAP | 0.98667 | 0.997 |
42DAP/41DAP | 0.93417 | 0.491 |
43DAP/42DAP | 1.08581 | 0.478 |
47DAP/43DAP | 1.12576 | 0.424 |
52DAP/47DAP | 0.88261 | 0.575 |
57DAP/52DAP | 0.78347 | 0.299 |
57DAP/7DAP | 0.61337 | 0.186 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.58594 | 0.033 |
17DAP/reference | 1.01066 | 1 |
27DAP/reference | 0.76142 | 0.012 |
39DAP/reference | 1.01342 | 0.64 |
41DAP/reference | 0.68692 | 0.012 |
42DAP/reference | 0.77221 | 0.01 |
43DAP/reference | 0.86264 | 0.069 |
47DAP/reference | 1.14363 | 0.514 |
52DAP/reference | 0.79778 | 0.021 |
57DAP/reference | 0.93411 | 0.02 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.78993 | 0.204 |
17DAP/reference | 0.91195 | 0.347 |
27DAP/reference | 0.90612 | 0.173 |
39DAP/reference | 0.99826 | 0.722 |
41DAP/reference | 0.83764 | 0.015 |
42DAP/reference | 1.06868 | 0.398 |
43DAP/reference | 0.60845 | 0.005 |
47DAP/reference | 1.14807 | 0.03 |
52DAP/reference | 0.85553 | 0.034 |
57DAP/reference | 0.8 | 0.18 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 2.08209 | 0.027 |
17DAP/reference | 1.64582 | 0.159 |
27DAP/reference | 1.29154 | 0.029 |
39DAP/reference | 1.02093 | 0.987 |
41DAP/reference | 0.87932 | 0.077 |
42DAP/reference | 0.78142 | 0.108 |
43DAP/reference | 0.90766 | 0.294 |
47DAP/reference | 1.00057 | 0.626 |
52DAP/reference | 0.7612 | 0.166 |
57DAP/reference | 1.27172 | 0.048 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.96494 | 1 |
26DAP/20DAP | 0.9869 | 1 |
34DAP/26DAP | 0.97585 | 0.944 |
51DAP/34DAP | 1.01604 | 0.927 |
52DAP/51DAP | 0.80403 | 1 |
53DAP/52DAP | 1.24057 | 0.565 |
55DAP/53DAP | 1.04538 | 0.976 |
57DAP/55DAP | 0.91939 | 0.647 |
62DAP/57DAP | 0.86578 | 0.871 |
68DAP/62DAP | 0.83643 | 0.345 |
68DAP/14DAP | 0.87242 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.99595 | 0.016 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.36846 | 0.089 |
Mature Green Tomato/Ripe Tomato | 1.46081 | 0.018 |
Immature Eggplant/Mature Eggplant | 0.73039 | 0.072 |
Ripe Pepper/Ripe Tomato | 1.02541 | 1 |
Mature Eggplant/Ripe Tomato | 1.12144 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.77871 | 0.708 |
1-1-2/M82 | 1.2126 | 1 |
12-2/M82 | 0.77726 | 0.955 |
12-4/M82 | 1.42555 | 1 |
1-3/M82 | 2.22557 | 0.479 |
2-1-1/M82 | 0.82472 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.41583 | |
3-2/M82 | 1.58539 | 0.443 |
4-1-1/M82 | 1.29694 | 1 |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 1.59701 | 0.508 |
4-3/M82 | 1.62939 | 0.268 |
5-3/M82 | 0.93225 | 0.642 |
6-2/M82 | 1.09462 | 1 |
6-3/M82 | 1.18236 | 1 |
7-1/M82 | 1.53293 | |
7-2/M82 | 2.2355 | 0.282 |
9-3-2/M82 | 1.30707 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.96634 | 1 |
IL2-6/WTpooled | 0.79435 | 0.473 |
IL7-5/WTpooled | 1.21369 | |
IL7-3/WTpooled | 0.94227 | |
IL12-4/WTpooled | 0.99454 | 1 |
IL1-4/WTpooled | 1.24501 | 1 |
WT/WTpooled | 0.98343 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.84837 | |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.02428 | 0.921 |
DC3000/delta hrp 6h | 0.92877 | 0.95 |
DC3000/delta hrp 12h | 1.03604 | 1 |
DC3000/delta hrp 24h | 0.79731 | 0.061 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.62109 | 0.024 |
DC3000 delta B/DC3000 delta AB | 0.73433 | 0.02 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.97663 | 1 |
Exp 36h | 0.99534 | 1 |
Exp 60h | 0.86771 | 0.586 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.91166 | 0.306 |
transgenic ySAMdc/azygous control (breaker) | 0.75971 | 0.15 |
transgenic ySAMdc/azygous control (red) | 1.11414 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.03799 | 0.958 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.48378 | 0.223 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.20097 | 0.14 |
Manapal/WT (break) | 1.05097 | 1 |
Manapal/WT (red) | 1.75312 | 0.108 |
|
|