Expression of 1-1-2.4.4.20

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.310460.224
27DAP/17DAP0.870620.694
39DAP/27DAP1.300790.575
41DAP/39DAP0.552590.041
42DAP/41DAP1.002551
43DAP/42DAP1.145211
47DAP/43DAP1.24910.584
52DAP/47DAP0.754270.43
57DAP/52DAP1.005490.983

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.231670.844
17DAP/reference0.762950.053
27DAP/reference0.779540.24
39DAP/reference0.653760.009
41DAP/reference0.641610.008
42DAP/reference0.961040.25
43DAP/reference0.73437
47DAP/reference0.884610.207
52DAP/reference0.729810.012
57DAP/referenceN/AN/A

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.045911
27DAP/17DAP0.987070.919
39DAP/27DAP1.094970.758
41DAP/39DAP0.986670.997
42DAP/41DAP0.934170.491
43DAP/42DAP1.085810.478
47DAP/43DAP1.125760.424
52DAP/47DAP0.882610.575
57DAP/52DAP0.783470.299
57DAP/7DAP0.613370.186

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.585940.033
17DAP/reference1.010661
27DAP/reference0.761420.012
39DAP/reference1.013420.64
41DAP/reference0.686920.012
42DAP/reference0.772210.01
43DAP/reference0.862640.069
47DAP/reference1.143630.514
52DAP/reference0.797780.021
57DAP/reference0.934110.02

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.789930.204
17DAP/reference0.911950.347
27DAP/reference0.906120.173
39DAP/reference0.998260.722
41DAP/reference0.837640.015
42DAP/reference1.068680.398
43DAP/reference0.608450.005
47DAP/reference1.148070.03
52DAP/reference0.855530.034
57DAP/reference0.80.18

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.082090.027
17DAP/reference1.645820.159
27DAP/reference1.291540.029
39DAP/reference1.020930.987
41DAP/reference0.879320.077
42DAP/reference0.781420.108
43DAP/reference0.907660.294
47DAP/reference1.000570.626
52DAP/reference0.76120.166
57DAP/reference1.271720.048

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.964941
26DAP/20DAP0.98691
34DAP/26DAP0.975850.944
51DAP/34DAP1.016040.927
52DAP/51DAP0.804031
53DAP/52DAP1.240570.565
55DAP/53DAP1.045380.976
57DAP/55DAP0.919390.647
62DAP/57DAP0.865780.871
68DAP/62DAP0.836430.345
68DAP/14DAP0.872420.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.995950.016

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.368460.089
Mature Green Tomato/Ripe Tomato1.460810.018
Immature Eggplant/Mature Eggplant0.730390.072
Ripe Pepper/Ripe Tomato1.025411
Mature Eggplant/Ripe Tomato1.121441

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.778710.708
1-1-2/M821.21261
12-2/M820.777260.955
12-4/M821.425551
1-3/M822.225570.479
2-1-1/M820.82472
2-1/M82N/AN/A
2-6/M821.41583
3-2/M821.585390.443
4-1-1/M821.296941
4-1/M82N/AN/A
4-3-2/M821.597010.508
4-3/M821.629390.268
5-3/M820.932250.642
6-2/M821.094621
6-3/M821.182361
7-1/M821.53293
7-2/M822.23550.282
9-3-2/M821.307071

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.966341
IL2-6/WTpooled0.794350.473
IL7-5/WTpooled1.21369
IL7-3/WTpooled0.94227
IL12-4/WTpooled0.994541
IL1-4/WTpooled1.245011
WT/WTpooled0.983431

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.84837

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.024280.921
DC3000/delta hrp 6h0.928770.95
DC3000/delta hrp 12h1.036041
DC3000/delta hrp 24h0.797310.061

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.621090.024
DC3000 delta B/DC3000 delta AB0.734330.02

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.976631
Exp 36h0.995341
Exp 60h0.867710.586

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0hN/AN/A
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.911660.306
transgenic ySAMdc/azygous control (breaker)0.759710.15
transgenic ySAMdc/azygous control (red)1.114140.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.037990.958

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.483780.223

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.200970.14
Manapal/WT (break)1.050971
Manapal/WT (red)1.753120.108