Expression of 1-1-2.4.4.6
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.31882 | 0.264 |
27DAP/17DAP | 0.77982 | 0.522 |
39DAP/27DAP | 0.94442 | 0.663 |
41DAP/39DAP | 0.962 | 0.646 |
42DAP/41DAP | 0.9904 | 1 |
43DAP/42DAP | 0.98026 | 0.925 |
47DAP/43DAP | 1.17241 | 0.793 |
52DAP/47DAP | 0.93367 | 0.781 |
57DAP/52DAP | 1.28668 | 0.969 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.84402 | 0.109 |
17DAP/reference | 0.95382 | 0.342 |
27DAP/reference | 1.02203 | 0.966 |
39DAP/reference | 1.10973 | 0.545 |
41DAP/reference | 0.89378 | 0.114 |
42DAP/reference | 0.8901 | 0.025 |
43DAP/reference | 0.9547 | 0.302 |
47DAP/reference | 1.00744 | 1 |
52DAP/reference | 0.95177 | 0.35 |
57DAP/reference | 0.99518 | 0.701 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.05367 | 0.728 |
27DAP/17DAP | 0.97856 | 0.887 |
39DAP/27DAP | 0.7774 | 0.204 |
41DAP/39DAP | 0.95673 | 0.923 |
42DAP/41DAP | 1.06417 | 0.753 |
43DAP/42DAP | 0.95799 | 0.618 |
47DAP/43DAP | 0.93833 | 0.588 |
52DAP/47DAP | 1.00156 | 0.93 |
57DAP/52DAP | 0.98001 | 0.756 |
57DAP/7DAP | 1.81796 | 0.23 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.21615 | 0.218 |
17DAP/reference | 1.19943 | 0.028 |
27DAP/reference | 1.36008 | 0.02 |
39DAP/reference | 1.29681 | 0.021 |
41DAP/reference | 1.0811 | 0.949 |
42DAP/reference | 1.33676 | 0.021 |
43DAP/reference | 1.14442 | 0.2 |
47DAP/reference | 1.05732 | 0.761 |
52DAP/reference | 0.99842 | 0.679 |
57DAP/reference | 1.05389 | 0.799 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04411 | 0.943 |
17DAP/reference | 0.88506 | 0.239 |
27DAP/reference | 0.8682 | 0.067 |
39DAP/reference | 1.03165 | 0.848 |
41DAP/reference | 0.86426 | 0.1 |
42DAP/reference | 0.77531 | 0.019 |
43DAP/reference | 0.8645 | 0.196 |
47DAP/reference | 0.81886 | 0.02 |
52DAP/reference | 0.94948 | 0.351 |
57DAP/reference | 1.02527 | 0.957 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.11282 | 0.32 |
17DAP/reference | 0.90402 | 0.322 |
27DAP/reference | 1.06258 | 0.621 |
39DAP/reference | 0.95471 | 0.328 |
41DAP/reference | 1.15865 | 0.439 |
42DAP/reference | 1.13657 | 0.391 |
43DAP/reference | 0.88329 | 0.398 |
47DAP/reference | 0.88119 | 0.153 |
52DAP/reference | 1.01683 | 0.979 |
57DAP/reference | 0.97559 | 0.564 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.20493 | 0.966 |
26DAP/20DAP | 0.93578 | 0.512 |
34DAP/26DAP | 1.01903 | 1 |
51DAP/34DAP | 1.01426 | 0.957 |
52DAP/51DAP | 0.72178 | 1 |
53DAP/52DAP | 1.01081 | 0.951 |
55DAP/53DAP | 1.2133 | 0.387 |
57DAP/55DAP | 0.99398 | 0.899 |
62DAP/57DAP | 1.0603 | 1 |
68DAP/62DAP | 0.83111 | 0.505 |
68DAP/14DAP | 1.11106 | 0.676 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.9755 | 0.576 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.02873 | 1 |
Mature Green Tomato/Ripe Tomato | 1.01351 | 1 |
Immature Eggplant/Mature Eggplant | 1.11618 | 0.215 |
Ripe Pepper/Ripe Tomato | 1.43052 | 1 |
Mature Eggplant/Ripe Tomato | 1.52868 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.27732 | |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.98037 | 1 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | 1.10765 | |
2-6/M82 | N/A | N/A |
3-2/M82 | 1.22258 | 0.717 |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 1.29213 | 0.268 |
5-3/M82 | 0.76696 | 0.642 |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | 1.5442 | |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.94246 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.8488 | 0.418 |
IL12-4/WTpooled | 1.09367 | 0.557 |
IL1-4/WTpooled | 1.17562 | |
WT/WTpooled | 1.03977 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.95235 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.93319 | 1 |
DC3000/delta hrp 6h | 1.02404 | 1 |
DC3000/delta hrp 12h | 1.12026 | 1 |
DC3000/delta hrp 24h | 1.00902 | 0.797 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.96421 | 1 |
Exp 36h | 1.13752 | 1 |
Exp 60h | 1.12733 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 1.01824 | 1 |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.97874 | 0.324 |
transgenic ySAMdc/azygous control (breaker) | 0.72076 | 0.131 |
transgenic ySAMdc/azygous control (red) | 0.81838 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.02385 | 0.17 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.65689 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.74703 | 0.172 |
Manapal/WT (break) | 0.79183 | 0.299 |
Manapal/WT (red) | 0.84818 | 0.503 |
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