Expression of 1-1-2.4.4.6

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.318820.264
27DAP/17DAP0.779820.522
39DAP/27DAP0.944420.663
41DAP/39DAP0.9620.646
42DAP/41DAP0.99041
43DAP/42DAP0.980260.925
47DAP/43DAP1.172410.793
52DAP/47DAP0.933670.781
57DAP/52DAP1.286680.969

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.844020.109
17DAP/reference0.953820.342
27DAP/reference1.022030.966
39DAP/reference1.109730.545
41DAP/reference0.893780.114
42DAP/reference0.89010.025
43DAP/reference0.95470.302
47DAP/reference1.007441
52DAP/reference0.951770.35
57DAP/reference0.995180.701

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.053670.728
27DAP/17DAP0.978560.887
39DAP/27DAP0.77740.204
41DAP/39DAP0.956730.923
42DAP/41DAP1.064170.753
43DAP/42DAP0.957990.618
47DAP/43DAP0.938330.588
52DAP/47DAP1.001560.93
57DAP/52DAP0.980010.756
57DAP/7DAP1.817960.23

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.216150.218
17DAP/reference1.199430.028
27DAP/reference1.360080.02
39DAP/reference1.296810.021
41DAP/reference1.08110.949
42DAP/reference1.336760.021
43DAP/reference1.144420.2
47DAP/reference1.057320.761
52DAP/reference0.998420.679
57DAP/reference1.053890.799

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.044110.943
17DAP/reference0.885060.239
27DAP/reference0.86820.067
39DAP/reference1.031650.848
41DAP/reference0.864260.1
42DAP/reference0.775310.019
43DAP/reference0.86450.196
47DAP/reference0.818860.02
52DAP/reference0.949480.351
57DAP/reference1.025270.957

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.112820.32
17DAP/reference0.904020.322
27DAP/reference1.062580.621
39DAP/reference0.954710.328
41DAP/reference1.158650.439
42DAP/reference1.136570.391
43DAP/reference0.883290.398
47DAP/reference0.881190.153
52DAP/reference1.016830.979
57DAP/reference0.975590.564

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.204930.966
26DAP/20DAP0.935780.512
34DAP/26DAP1.019031
51DAP/34DAP1.014260.957
52DAP/51DAP0.721781
53DAP/52DAP1.010810.951
55DAP/53DAP1.21330.387
57DAP/55DAP0.993980.899
62DAP/57DAP1.06031
68DAP/62DAP0.831110.505
68DAP/14DAP1.111060.676

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.97550.576

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.028731
Mature Green Tomato/Ripe Tomato1.013511
Immature Eggplant/Mature Eggplant1.116180.215
Ripe Pepper/Ripe Tomato1.430521
Mature Eggplant/Ripe Tomato1.528680.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.27732
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M820.980371
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M821.10765
2-6/M82N/AN/A
3-2/M821.222580.717
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M821.292130.268
5-3/M820.766960.642
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M821.5442
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.942461
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.84880.418
IL12-4/WTpooled1.093670.557
IL1-4/WTpooled1.17562
WT/WTpooled1.039771

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.952351

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.933191
DC3000/delta hrp 6h1.024041
DC3000/delta hrp 12h1.120261
DC3000/delta hrp 24h1.009020.797

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.964211
Exp 36h1.137521
Exp 60h1.127330.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h1.018241
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.978740.324
transgenic ySAMdc/azygous control (breaker)0.720760.131
transgenic ySAMdc/azygous control (red)0.818381

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.023850.17

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.656890.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.747030.172
Manapal/WT (break)0.791830.299
Manapal/WT (red)0.848180.503