Expression of 1-1-2.4.4.8

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.122740.602
27DAP/17DAP1.344720.681
39DAP/27DAP1.013470.798
41DAP/39DAP1.218430.282
42DAP/41DAP1.005311
43DAP/42DAP1.023121
47DAP/43DAP0.95330.825
52DAP/47DAP1.015820.982
57DAP/52DAP1.003220.983

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.900130.06
17DAP/reference1.013780.675
27DAP/reference1.000971
39DAP/reference0.954990.17
41DAP/reference0.95670.114
42DAP/reference0.93970.045
43DAP/reference1.023230.758
47DAP/reference0.941780.055
52DAP/reference0.974320.416
57DAP/reference0.87680.045

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.949150.629
27DAP/17DAP1.056920.988
39DAP/27DAP1.002591
41DAP/39DAP0.976740.98
42DAP/41DAP1.080690.635
43DAP/42DAP1.04270.83
47DAP/43DAP1.14480.344
52DAP/47DAP1.166730.689
57DAP/52DAP0.821390.424
57DAP/7DAP0.920911

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.36930.058
17DAP/reference1.200230.032
27DAP/reference0.950930.348
39DAP/reference0.912250.039
41DAP/reference1.149350.375
42DAP/reference1.052260.686
43DAP/reference0.90910.151
47DAP/reference0.947980.383
52DAP/reference0.890430.077
57DAP/reference1.058830.5

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.012980.894
17DAP/reference0.960590.536
27DAP/reference0.944690.407
39DAP/reference1.024081
41DAP/reference0.994510.631
42DAP/reference0.855990.019
43DAP/reference0.783290.012
47DAP/reference0.821590.012
52DAP/reference0.967860.469
57DAP/reference1.07850.363

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.721440.03
17DAP/reference1.265520.431
27DAP/reference1.181750.149
39DAP/reference1.030510.836
41DAP/reference1.026031
42DAP/reference0.888820.22
43DAP/reference0.90670.246
47DAP/reference0.976620.452
52DAP/reference0.887630.327
57DAP/reference1.121150.604

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.006991
26DAP/20DAP0.78080.512
34DAP/26DAP0.772630.192
51DAP/34DAP0.855070.64
52DAP/51DAP1.153390.776
53DAP/52DAP1.023720.921
55DAP/53DAP1.310550.527
57DAP/55DAP1.149320.997
62DAP/57DAP1.167530.158
68DAP/62DAP1.063170.872
68DAP/14DAP1.187690.521

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.102620.558

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.557370.075
Mature Green Tomato/Ripe Tomato1.448220.023
Immature Eggplant/Mature Eggplant0.82370.125
Ripe Pepper/Ripe Tomato0.646340.293
Mature Eggplant/Ripe Tomato1.720530.373

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.962630.944
1-1-2/M82N/AN/A
12-2/M821.286250.61
12-4/M821.074841
1-3/M820.905610.286
2-1-1/M821.115810.343
2-1/M82N/AN/A
2-6/M821.224950.594
3-2/M821.288510.388
4-1-1/M821.093171
4-1/M821.163730.853
4-3-2/M82N/AN/A
4-3/M821.02781
5-3/M820.874350.642
6-2/M821.003271
6-3/M820.856721
7-1/M82N/AN/A
7-2/M821.092571
9-3-2/M821.027691

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.862090.383
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.994031
IL12-4/WTpooled1.105430.624
IL1-4/WTpooled0.99926
WT/WTpooled0.992131

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.34902

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.94821
DC3000/delta hrp 6h1.166511
DC3000/delta hrp 12h1.24591
DC3000/delta hrp 24h1.029920.76

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.296720.408
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36h2.072580.326
Exp 60h0.801740.664

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h0.959321
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.020670.297
transgenic ySAMdc/azygous control (breaker)0.859040.49
transgenic ySAMdc/azygous control (red)0.983651

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.995970.784

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.816090.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.412770.172
Manapal/WT (break)0.701680.299
Manapal/WT (red)1.301530.413