Expression of 1-1-2.4.4.8
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.12274 | 0.602 |
27DAP/17DAP | 1.34472 | 0.681 |
39DAP/27DAP | 1.01347 | 0.798 |
41DAP/39DAP | 1.21843 | 0.282 |
42DAP/41DAP | 1.00531 | 1 |
43DAP/42DAP | 1.02312 | 1 |
47DAP/43DAP | 0.9533 | 0.825 |
52DAP/47DAP | 1.01582 | 0.982 |
57DAP/52DAP | 1.00322 | 0.983 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.90013 | 0.06 |
17DAP/reference | 1.01378 | 0.675 |
27DAP/reference | 1.00097 | 1 |
39DAP/reference | 0.95499 | 0.17 |
41DAP/reference | 0.9567 | 0.114 |
42DAP/reference | 0.9397 | 0.045 |
43DAP/reference | 1.02323 | 0.758 |
47DAP/reference | 0.94178 | 0.055 |
52DAP/reference | 0.97432 | 0.416 |
57DAP/reference | 0.8768 | 0.045 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.94915 | 0.629 |
27DAP/17DAP | 1.05692 | 0.988 |
39DAP/27DAP | 1.00259 | 1 |
41DAP/39DAP | 0.97674 | 0.98 |
42DAP/41DAP | 1.08069 | 0.635 |
43DAP/42DAP | 1.0427 | 0.83 |
47DAP/43DAP | 1.1448 | 0.344 |
52DAP/47DAP | 1.16673 | 0.689 |
57DAP/52DAP | 0.82139 | 0.424 |
57DAP/7DAP | 0.92091 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.3693 | 0.058 |
17DAP/reference | 1.20023 | 0.032 |
27DAP/reference | 0.95093 | 0.348 |
39DAP/reference | 0.91225 | 0.039 |
41DAP/reference | 1.14935 | 0.375 |
42DAP/reference | 1.05226 | 0.686 |
43DAP/reference | 0.9091 | 0.151 |
47DAP/reference | 0.94798 | 0.383 |
52DAP/reference | 0.89043 | 0.077 |
57DAP/reference | 1.05883 | 0.5 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.01298 | 0.894 |
17DAP/reference | 0.96059 | 0.536 |
27DAP/reference | 0.94469 | 0.407 |
39DAP/reference | 1.02408 | 1 |
41DAP/reference | 0.99451 | 0.631 |
42DAP/reference | 0.85599 | 0.019 |
43DAP/reference | 0.78329 | 0.012 |
47DAP/reference | 0.82159 | 0.012 |
52DAP/reference | 0.96786 | 0.469 |
57DAP/reference | 1.0785 | 0.363 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.72144 | 0.03 |
17DAP/reference | 1.26552 | 0.431 |
27DAP/reference | 1.18175 | 0.149 |
39DAP/reference | 1.03051 | 0.836 |
41DAP/reference | 1.02603 | 1 |
42DAP/reference | 0.88882 | 0.22 |
43DAP/reference | 0.9067 | 0.246 |
47DAP/reference | 0.97662 | 0.452 |
52DAP/reference | 0.88763 | 0.327 |
57DAP/reference | 1.12115 | 0.604 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.00699 | 1 |
26DAP/20DAP | 0.7808 | 0.512 |
34DAP/26DAP | 0.77263 | 0.192 |
51DAP/34DAP | 0.85507 | 0.64 |
52DAP/51DAP | 1.15339 | 0.776 |
53DAP/52DAP | 1.02372 | 0.921 |
55DAP/53DAP | 1.31055 | 0.527 |
57DAP/55DAP | 1.14932 | 0.997 |
62DAP/57DAP | 1.16753 | 0.158 |
68DAP/62DAP | 1.06317 | 0.872 |
68DAP/14DAP | 1.18769 | 0.521 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.10262 | 0.558 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.55737 | 0.075 |
Mature Green Tomato/Ripe Tomato | 1.44822 | 0.023 |
Immature Eggplant/Mature Eggplant | 0.8237 | 0.125 |
Ripe Pepper/Ripe Tomato | 0.64634 | 0.293 |
Mature Eggplant/Ripe Tomato | 1.72053 | 0.373 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.96263 | 0.944 |
1-1-2/M82 | N/A | N/A |
12-2/M82 | 1.28625 | 0.61 |
12-4/M82 | 1.07484 | 1 |
1-3/M82 | 0.90561 | 0.286 |
2-1-1/M82 | 1.11581 | 0.343 |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.22495 | 0.594 |
3-2/M82 | 1.28851 | 0.388 |
4-1-1/M82 | 1.09317 | 1 |
4-1/M82 | 1.16373 | 0.853 |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 1.0278 | 1 |
5-3/M82 | 0.87435 | 0.642 |
6-2/M82 | 1.00327 | 1 |
6-3/M82 | 0.85672 | 1 |
7-1/M82 | N/A | N/A |
7-2/M82 | 1.09257 | 1 |
9-3-2/M82 | 1.02769 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.86209 | 0.383 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.99403 | 1 |
IL12-4/WTpooled | 1.10543 | 0.624 |
IL1-4/WTpooled | 0.99926 | |
WT/WTpooled | 0.99213 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.34902 | |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.9482 | 1 |
DC3000/delta hrp 6h | 1.16651 | 1 |
DC3000/delta hrp 12h | 1.2459 | 1 |
DC3000/delta hrp 24h | 1.02992 | 0.76 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.29672 | 0.408 |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | 2.07258 | 0.326 |
Exp 60h | 0.80174 | 0.664 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 0.95932 | 1 |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.02067 | 0.297 |
transgenic ySAMdc/azygous control (breaker) | 0.85904 | 0.49 |
transgenic ySAMdc/azygous control (red) | 0.98365 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.99597 | 0.784 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.81609 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.41277 | 0.172 |
Manapal/WT (break) | 0.70168 | 0.299 |
Manapal/WT (red) | 1.30153 | 0.413 |
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