Expression of 1-1-2.4.4.9

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.709540.036
27DAP/17DAP0.93410.863
39DAP/27DAP1.392410.507
41DAP/39DAP0.748950.22
42DAP/41DAP0.982061
43DAP/42DAP0.912370.801
47DAP/43DAP1.056310.999
52DAP/47DAP1.43490.736
57DAP/52DAP1.648740.692

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.856390.039
17DAP/reference0.975880.597
27DAP/reference0.963370.525
39DAP/reference0.976760.68
41DAP/reference0.906890.114
42DAP/reference0.960380.233
43DAP/reference1.043870.646
47DAP/reference1.012831
52DAP/reference0.97790.461
57DAP/reference1.030020.952

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.992850.732
27DAP/17DAP0.967660.887
39DAP/27DAP1.024060.854
41DAP/39DAP1.147870.623
42DAP/41DAP0.94950.612
43DAP/42DAP1.020451
47DAP/43DAP1.075310.788
52DAP/47DAP0.813470.072
57DAP/52DAP0.95550.691
57DAP/7DAP0.871381

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.415310.044
17DAP/reference1.230340.038
27DAP/reference0.978460.494
39DAP/reference1.139160.009
41DAP/reference1.204530.113
42DAP/reference1.175930.132
43DAP/reference1.117740.364
47DAP/reference1.131920.48
52DAP/reference1.149460.212
57DAP/reference1.375190.094

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.044080.802
17DAP/reference0.86350.052
27DAP/reference0.962740.366
39DAP/reference0.871020.14
41DAP/reference0.862940.13
42DAP/reference0.821120.027
43DAP/reference0.950590.459
47DAP/reference0.832210.011
52DAP/reference0.937230.302
57DAP/reference0.938360.384

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.152430.134
17DAP/reference0.937510.433
27DAP/reference0.861380.113
39DAP/reference1.059230.613
41DAP/reference1.143310.286
42DAP/reference1.016361
43DAP/reference1.127220.565
47DAP/reference0.951050.335
52DAP/reference1.169870.463
57DAP/reference0.984580.633

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.134790.966
26DAP/20DAP1.640950.099
34DAP/26DAP0.652650.141
51DAP/34DAP1.252450.365
52DAP/51DAP0.959251
53DAP/52DAP1.045870.97
55DAP/53DAP1.066590.991
57DAP/55DAP0.951850.799
62DAP/57DAP0.838130.28
68DAP/62DAP1.159920.609
68DAP/14DAP1.925240.636

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.102060.865

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.844770.309
Mature Green Tomato/Ripe Tomato1.080030.835
Immature Eggplant/Mature Eggplant1.279330.07
Ripe Pepper/Ripe Tomato2.568690.258
Mature Eggplant/Ripe Tomato1.041511

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.356390.877
1-1-2/M820.84108
12-2/M821.068871
12-4/M821.036341
1-3/M82N/AN/A
2-1-1/M820.73686
2-1/M82N/AN/A
2-6/M821.10662
3-2/M821.08177
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M820.734840.551
5-3/M821.370350.572
6-2/M821.178311
6-3/M820.983241
7-1/M820.821660.452
7-2/M821.28875
9-3-2/M820.877151

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.880991
IL2-6/WTpooled1.336760.46
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.903270.418
IL12-4/WTpooled1.430630.737
IL1-4/WTpooled1.19178
WT/WTpooled1.139591

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.967420.197

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.98181
DC3000/delta hrp 6h1.074151
DC3000/delta hrp 12h1.146761
DC3000/delta hrp 24h0.999241

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.83614
DC3000 delta B/DC3000 delta AB1.531180.162

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.221781
Exp 36h1.37490.693
Exp 60h1.132941

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h1.650651
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.983420.529
transgenic ySAMdc/azygous control (breaker)1.228331
transgenic ySAMdc/azygous control (red)1.021740.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.085430.035

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.564210.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.190890.105
Manapal/WT (break)1.288260.13
Manapal/WT (red)0.656830.184