Expression of 1-1-2.4.4.9
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.70954 | 0.036 |
27DAP/17DAP | 0.9341 | 0.863 |
39DAP/27DAP | 1.39241 | 0.507 |
41DAP/39DAP | 0.74895 | 0.22 |
42DAP/41DAP | 0.98206 | 1 |
43DAP/42DAP | 0.91237 | 0.801 |
47DAP/43DAP | 1.05631 | 0.999 |
52DAP/47DAP | 1.4349 | 0.736 |
57DAP/52DAP | 1.64874 | 0.692 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.85639 | 0.039 |
17DAP/reference | 0.97588 | 0.597 |
27DAP/reference | 0.96337 | 0.525 |
39DAP/reference | 0.97676 | 0.68 |
41DAP/reference | 0.90689 | 0.114 |
42DAP/reference | 0.96038 | 0.233 |
43DAP/reference | 1.04387 | 0.646 |
47DAP/reference | 1.01283 | 1 |
52DAP/reference | 0.9779 | 0.461 |
57DAP/reference | 1.03002 | 0.952 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.99285 | 0.732 |
27DAP/17DAP | 0.96766 | 0.887 |
39DAP/27DAP | 1.02406 | 0.854 |
41DAP/39DAP | 1.14787 | 0.623 |
42DAP/41DAP | 0.9495 | 0.612 |
43DAP/42DAP | 1.02045 | 1 |
47DAP/43DAP | 1.07531 | 0.788 |
52DAP/47DAP | 0.81347 | 0.072 |
57DAP/52DAP | 0.9555 | 0.691 |
57DAP/7DAP | 0.87138 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.41531 | 0.044 |
17DAP/reference | 1.23034 | 0.038 |
27DAP/reference | 0.97846 | 0.494 |
39DAP/reference | 1.13916 | 0.009 |
41DAP/reference | 1.20453 | 0.113 |
42DAP/reference | 1.17593 | 0.132 |
43DAP/reference | 1.11774 | 0.364 |
47DAP/reference | 1.13192 | 0.48 |
52DAP/reference | 1.14946 | 0.212 |
57DAP/reference | 1.37519 | 0.094 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04408 | 0.802 |
17DAP/reference | 0.8635 | 0.052 |
27DAP/reference | 0.96274 | 0.366 |
39DAP/reference | 0.87102 | 0.14 |
41DAP/reference | 0.86294 | 0.13 |
42DAP/reference | 0.82112 | 0.027 |
43DAP/reference | 0.95059 | 0.459 |
47DAP/reference | 0.83221 | 0.011 |
52DAP/reference | 0.93723 | 0.302 |
57DAP/reference | 0.93836 | 0.384 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.15243 | 0.134 |
17DAP/reference | 0.93751 | 0.433 |
27DAP/reference | 0.86138 | 0.113 |
39DAP/reference | 1.05923 | 0.613 |
41DAP/reference | 1.14331 | 0.286 |
42DAP/reference | 1.01636 | 1 |
43DAP/reference | 1.12722 | 0.565 |
47DAP/reference | 0.95105 | 0.335 |
52DAP/reference | 1.16987 | 0.463 |
57DAP/reference | 0.98458 | 0.633 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.13479 | 0.966 |
26DAP/20DAP | 1.64095 | 0.099 |
34DAP/26DAP | 0.65265 | 0.141 |
51DAP/34DAP | 1.25245 | 0.365 |
52DAP/51DAP | 0.95925 | 1 |
53DAP/52DAP | 1.04587 | 0.97 |
55DAP/53DAP | 1.06659 | 0.991 |
57DAP/55DAP | 0.95185 | 0.799 |
62DAP/57DAP | 0.83813 | 0.28 |
68DAP/62DAP | 1.15992 | 0.609 |
68DAP/14DAP | 1.92524 | 0.636 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.10206 | 0.865 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.84477 | 0.309 |
Mature Green Tomato/Ripe Tomato | 1.08003 | 0.835 |
Immature Eggplant/Mature Eggplant | 1.27933 | 0.07 |
Ripe Pepper/Ripe Tomato | 2.56869 | 0.258 |
Mature Eggplant/Ripe Tomato | 1.04151 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.35639 | 0.877 |
1-1-2/M82 | 0.84108 | |
12-2/M82 | 1.06887 | 1 |
12-4/M82 | 1.03634 | 1 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | 0.73686 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.10662 | |
3-2/M82 | 1.08177 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 0.73484 | 0.551 |
5-3/M82 | 1.37035 | 0.572 |
6-2/M82 | 1.17831 | 1 |
6-3/M82 | 0.98324 | 1 |
7-1/M82 | 0.82166 | 0.452 |
7-2/M82 | 1.28875 | |
9-3-2/M82 | 0.87715 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.88099 | 1 |
IL2-6/WTpooled | 1.33676 | 0.46 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.90327 | 0.418 |
IL12-4/WTpooled | 1.43063 | 0.737 |
IL1-4/WTpooled | 1.19178 | |
WT/WTpooled | 1.13959 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.96742 | 0.197 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.9818 | 1 |
DC3000/delta hrp 6h | 1.07415 | 1 |
DC3000/delta hrp 12h | 1.14676 | 1 |
DC3000/delta hrp 24h | 0.99924 | 1 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.83614 | |
DC3000 delta B/DC3000 delta AB | 1.53118 | 0.162 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.22178 | 1 |
Exp 36h | 1.3749 | 0.693 |
Exp 60h | 1.13294 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 1.65065 | 1 |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.98342 | 0.529 |
transgenic ySAMdc/azygous control (breaker) | 1.22833 | 1 |
transgenic ySAMdc/azygous control (red) | 1.02174 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.08543 | 0.035 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.56421 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.19089 | 0.105 |
Manapal/WT (break) | 1.28826 | 0.13 |
Manapal/WT (red) | 0.65683 | 0.184 |
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