Expression of 1-1-2.4.6.17

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.230350.588
27DAP/17DAP1.011461
39DAP/27DAP0.988170.782
41DAP/39DAP0.906640.627
42DAP/41DAP1.057610.971
43DAP/42DAP1.083271
47DAP/43DAP0.890050.628
52DAP/47DAP0.91420.712
57DAP/52DAP1.217140.955

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.923280.211
17DAP/reference0.995810.904
27DAP/reference1.079640.258
39DAP/reference1.030680.615
41DAP/reference0.893090.201
42DAP/reference1.10920.05
43DAP/reference1.102340.04
47DAP/reference1.232470.006
52DAP/reference1.110030.229
57DAP/reference1.214670.017

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.979430.732
27DAP/17DAP0.923630.684
39DAP/27DAP1.209550.161
41DAP/39DAP0.994330.997
42DAP/41DAP0.969760.762
43DAP/42DAP1.219840.147
47DAP/43DAP1.013321
52DAP/47DAP1.205370.463
57DAP/52DAP0.922050.451
57DAP/7DAP0.858411

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.047010.718
17DAP/reference0.981310.599
27DAP/reference0.892130.185
39DAP/reference1.363030.267
41DAP/reference1.128630.325
42DAP/reference0.920960.32
43DAP/reference1.036921
47DAP/reference1.369260.015
52DAP/reference1.152030.563
57DAP/reference0.963730.443

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.95170.58
17DAP/reference1.160160.015
27DAP/reference1.154890.388
39DAP/reference1.075950.62
41DAP/reference1.166770.041
42DAP/reference1.245890.021
43DAP/reference0.958860.486
47DAP/reference1.160930.038
52DAP/reference1.090160.208
57DAP/reference0.928410.079

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.901730.127
17DAP/reference1.338510.273
27DAP/reference1.660360.096
39DAP/reference1.165570.084
41DAP/reference1.000720.754
42DAP/reference1.442730.018
43DAP/reference1.440420.03
47DAP/reference1.472360.007
52DAP/reference1.204760.657
57DAP/reference1.228160.892

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.001551
26DAP/20DAP0.803610.512
34DAP/26DAP1.039761
51DAP/34DAP0.901590.698
52DAP/51DAP1.017591
53DAP/52DAP1.292270.05
55DAP/53DAP1.232270.562
57DAP/55DAP1.197080.543
62DAP/57DAP1.291220.185
68DAP/62DAP1.152190.657
68DAP/14DAP1.825730.035

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.887720.322

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.253570.075
Mature Green Tomato/Ripe Tomato1.111560.363
Immature Eggplant/Mature Eggplant1.196160.198
Ripe Pepper/Ripe Tomato1.126281
Mature Eggplant/Ripe Tomato1.117271

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.284660.536
1-1-2/M821.45306
12-2/M82N/AN/A
12-4/M821.325951
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M820.83971
3-2/M821.53029
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M820.723140.72
5-3/M821.107651
6-2/M820.80423
6-3/M82N/AN/A
7-1/M821.0391
7-2/M820.8084
9-3-2/M820.784610.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.68978
IL12-4/WTpooled0.43425
IL1-4/WTpooled1.3001
WT/WTpooled0.70911

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.978811

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.102260.921
DC3000/delta hrp 6h0.878780.95
DC3000/delta hrp 12h0.973061
DC3000/delta hrp 24h0.950840.682

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.885291
Exp 36h1.454370.489
Exp 60h1.41950.215

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.059911
Var 0h0.896981
Var 12h I row2-row11.048360.406
Var 12h NI row2-row10.839370.403
Var 36h I row2-row10.757360.805
Var 36h NI row2-row11.194690.482
Var 60h I row2-row10.958170.952
Var 60h NI row2-row11.451070.904
Time course 0hI-0hNI0.914610.325
Time course 12hI-12hNI1.030960.734
Time course 36hI-36hNI0.894550.023
Time course 60hI-60hNI0.430020.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.862580.348
transgenic ySAMdc/azygous control (breaker)0.937860.49
transgenic ySAMdc/azygous control (red)1.119590.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.091160.204

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.12130.307
Manapal/WT (break)0.860371
Manapal/WT (red)1.191410.164