Expression of 1-1-2.4.6.2
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.49935 | 0.463 |
27DAP/17DAP | 1.0381 | 0.905 |
39DAP/27DAP | 1.15871 | 0.899 |
41DAP/39DAP | 1.25255 | 0.85 |
42DAP/41DAP | 0.94253 | 1 |
43DAP/42DAP | 1.18635 | 0.999 |
47DAP/43DAP | 1.08223 | 0.965 |
52DAP/47DAP | 1.43217 | 0.615 |
57DAP/52DAP | 0.76071 | 0.536 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.86449 | 0.033 |
17DAP/reference | 1.06707 | 0.104 |
27DAP/reference | 1.00335 | 1 |
39DAP/reference | 1.03368 | 0.343 |
41DAP/reference | 1.05934 | 0.158 |
42DAP/reference | 0.91358 | 0.038 |
43DAP/reference | 1.07058 | 0.142 |
47DAP/reference | 0.95586 | 0.224 |
52DAP/reference | 0.81294 | 0.06 |
57DAP/reference | 0.74198 | 0.02 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.48333 | 0.379 |
27DAP/17DAP | 1.44814 | |
39DAP/27DAP | 1.19515 | 0.659 |
41DAP/39DAP | 0.90314 | 0.986 |
42DAP/41DAP | 1.70356 | 0.354 |
43DAP/42DAP | 0.58607 | 0.022 |
47DAP/43DAP | 1.01921 | |
52DAP/47DAP | 1.24468 | 0.703 |
57DAP/52DAP | 2.05531 | 0.543 |
57DAP/7DAP | 1.22927 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.68816 | 0.138 |
17DAP/reference | 0.70832 | 0.108 |
27DAP/reference | 0.5514 | 0.01 |
39DAP/reference | 0.93764 | 0.411 |
41DAP/reference | 0.95829 | 0.326 |
42DAP/reference | 0.86941 | 0.16 |
43DAP/reference | 0.84242 | 0.192 |
47DAP/reference | 1.27714 | 0.191 |
52DAP/reference | 1.06732 | 0.74 |
57DAP/reference | 1.17243 | 0.308 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.03959 | 0.545 |
17DAP/reference | 1.09357 | 0.052 |
27DAP/reference | 1.12056 | 0.902 |
39DAP/reference | 1.12053 | 0.412 |
41DAP/reference | 0.88226 | 0.058 |
42DAP/reference | 0.85352 | 0.013 |
43DAP/reference | 1.01934 | 0.875 |
47DAP/reference | 1.00154 | 0.749 |
52DAP/reference | 1.19385 | 0.006 |
57DAP/reference | 1.24558 | 0.007 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.70984 | 0.127 |
17DAP/reference | 0.89333 | 0.308 |
27DAP/reference | 0.77788 | |
39DAP/reference | 1.19694 | 0.512 |
41DAP/reference | 1.02818 | 1 |
42DAP/reference | 0.99909 | 0.671 |
43DAP/reference | 1.0713 | 0.993 |
47DAP/reference | 0.87288 | 0.109 |
52DAP/reference | 1.31288 | 0.428 |
57DAP/reference | 0.57315 | 0.02 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.98152 | 1 |
26DAP/20DAP | 0.55479 | 0.223 |
34DAP/26DAP | 1.0011 | |
51DAP/34DAP | 0.9066 | 0.758 |
52DAP/51DAP | 0.66617 | 1 |
53DAP/52DAP | 1.42581 | 0.444 |
55DAP/53DAP | 0.67929 | 0.404 |
57DAP/55DAP | 0.89794 | 0.78 |
62DAP/57DAP | 0.96057 | 0.994 |
68DAP/62DAP | 1.09938 | 0.845 |
68DAP/14DAP | 0.95819 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.44892 | 0.814 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.91396 | 0.527 |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | 0.88345 | 0.159 |
Ripe Pepper/Ripe Tomato | 1.14156 | 0.258 |
Mature Eggplant/Ripe Tomato | 29.4199 | 0.373 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.85798 | 0.321 |
IL2-6/WTpooled | 0.99958 | 1 |
IL7-5/WTpooled | 0.9941 | 1 |
IL7-3/WTpooled | 0.63594 | 0.294 |
IL12-4/WTpooled | 1.03697 | 1 |
IL1-4/WTpooled | 0.88186 | 0.834 |
WT/WTpooled | 1.04048 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.99484 | 1 |
DC3000/delta hrp 6h | 0.8756 | 0.95 |
DC3000/delta hrp 12h | 1.14964 | 1 |
DC3000/delta hrp 24h | 0.81722 | 0.083 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.49646 | 0.228 |
Exp 36h | 1.16708 | 1 |
Exp 60h | 1.57697 | 0.226 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 1.10456 | 0.259 |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.93698 | 0.428 |
transgenic ySAMdc/azygous control (breaker) | 0.56114 | 0.15 |
transgenic ySAMdc/azygous control (red) | 1.10717 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.0372 | 0.135 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.38286 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.939 | 1 |
Manapal/WT (break) | 0.72522 | 0.333 |
Manapal/WT (red) | 1.50401 | 0.142 |
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