Expression of 1-1-2.4.7.13
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.68657 | 0.073 |
27DAP/17DAP | 0.9681 | 0.964 |
39DAP/27DAP | 2.28063 | 0.046 |
41DAP/39DAP | 0.85459 | 0.392 |
42DAP/41DAP | 0.82902 | 0.774 |
43DAP/42DAP | 1.10287 | 0.968 |
47DAP/43DAP | 0.8525 | 0.533 |
52DAP/47DAP | 1.20673 | 0.757 |
57DAP/52DAP | 1.15063 | 0.944 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.987 | 0.63 |
17DAP/reference | 1.0719 | 0.282 |
27DAP/reference | 0.8675 | 0.092 |
39DAP/reference | 1.01223 | 0.871 |
41DAP/reference | 1.10694 | 0.187 |
42DAP/reference | 0.8469 | 0.02 |
43DAP/reference | 0.95657 | 0.48 |
47DAP/reference | 0.88283 | 0.046 |
52DAP/reference | 0.79117 | 0.058 |
57DAP/reference | 0.74623 | 0.014 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.00317 | 0.871 |
27DAP/17DAP | 1.17668 | 0.5 |
39DAP/27DAP | 0.97238 | 0.87 |
41DAP/39DAP | 0.84465 | 0.446 |
42DAP/41DAP | 1.263 | 0.036 |
43DAP/42DAP | 1.04346 | 0.554 |
47DAP/43DAP | 1.04273 | 0.906 |
52DAP/47DAP | 0.92023 | 0.71 |
57DAP/52DAP | 0.91809 | 0.349 |
57DAP/7DAP | 1.19798 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.20133 | 0.095 |
17DAP/reference | 1.09106 | 0.221 |
27DAP/reference | 1.15527 | 0.041 |
39DAP/reference | 0.929 | 0.073 |
41DAP/reference | 1.05058 | 0.336 |
42DAP/reference | 1.21027 | 0.1 |
43DAP/reference | 1.09397 | 0.132 |
47DAP/reference | 0.96083 | 0.504 |
52DAP/reference | 1.23033 | 0.026 |
57DAP/reference | 1.21863 | 0.006 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.07188 | 0.438 |
17DAP/reference | 1.09423 | 0.21 |
27DAP/reference | 0.95502 | 0.366 |
39DAP/reference | 0.9195 | 0.152 |
41DAP/reference | 0.91468 | 0.156 |
42DAP/reference | 0.96763 | 0.355 |
43DAP/reference | 1.01136 | 0.892 |
47DAP/reference | 0.85407 | 0.025 |
52DAP/reference | 0.86712 | 0.04 |
57DAP/reference | 1.11964 | 0.007 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.24117 | 0.016 |
17DAP/reference | 0.9312 | 0.177 |
27DAP/reference | 0.95878 | 0.126 |
39DAP/reference | 1.07813 | 0.264 |
41DAP/reference | 1.13345 | 0.108 |
42DAP/reference | 1.02147 | 0.893 |
43DAP/reference | 0.93313 | 0.348 |
47DAP/reference | 0.93401 | 0.097 |
52DAP/reference | 1.07 | 0.509 |
57DAP/reference | 0.84949 | 0.104 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.89351 | 1 |
26DAP/20DAP | 0.97543 | 1 |
34DAP/26DAP | 1.06138 | 1 |
51DAP/34DAP | 1.82912 | 0.025 |
52DAP/51DAP | 0.89626 | 1 |
53DAP/52DAP | 1.33548 | 0.319 |
55DAP/53DAP | 0.80238 | 0.154 |
57DAP/55DAP | 1.03467 | 0.955 |
62DAP/57DAP | 0.98268 | 0.994 |
68DAP/62DAP | 0.87251 | 0.609 |
68DAP/14DAP | 0.7031 | 0.09 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.52268 | 0.03 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.98955 | 0.658 |
Mature Green Tomato/Ripe Tomato | 0.71205 | |
Immature Eggplant/Mature Eggplant | 1.15833 | |
Ripe Pepper/Ripe Tomato | 1.71174 | 0.258 |
Mature Eggplant/Ripe Tomato | 1.11211 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.75708 | 0.536 |
1-1-2/M82 | 0.84251 | |
12-2/M82 | 0.89257 | |
12-4/M82 | 0.82173 | 0.358 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.79085 | |
3-2/M82 | 1.00495 | 1 |
4-1-1/M82 | 0.3597 | |
4-1/M82 | 0.94939 | |
4-3-2/M82 | 0.83904 | 0.487 |
4-3/M82 | 1.19136 | |
5-3/M82 | 1.14886 | 0.572 |
6-2/M82 | N/A | N/A |
6-3/M82 | 1.32081 | |
7-1/M82 | 0.77197 | |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 1.09722 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.1022 | 0.277 |
IL2-6/WTpooled | 1.02674 | 0.659 |
IL7-5/WTpooled | 1.00549 | 1 |
IL7-3/WTpooled | 1.12774 | 0.362 |
IL12-4/WTpooled | 1.01373 | 0.891 |
IL1-4/WTpooled | 0.996 | 1 |
WT/WTpooled | 1.00994 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.86455 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.92317 | 0.839 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 1.2431 | 1 |
DC3000/delta hrp 24h | 0.70813 | 0.085 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.94024 | |
DC3000 delta B/DC3000 delta AB | 0.88102 | 0.087 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.01417 | 1 |
Var 0h | 1.01693 | 1 |
Var 12h I row2-row1 | 1.14615 | 0.58 |
Var 12h NI row2-row1 | 1.13089 | 0.649 |
Var 36h I row2-row1 | 1.1712 | 0.305 |
Var 36h NI row2-row1 | 0.86783 | 0.584 |
Var 60h I row2-row1 | 0.76957 | 0.306 |
Var 60h NI row2-row1 | 1.00757 | 1 |
Time course 0hI-0hNI | 1.12686 | 0.603 |
Time course 12hI-12hNI | 1.13406 | 0.26 |
Time course 36hI-36hNI | 1.38546 | 0.011 |
Time course 60hI-60hNI | 2.4025 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.93911 | 0.314 |
transgenic ySAMdc/azygous control (breaker) | 0.98464 | 1 |
transgenic ySAMdc/azygous control (red) | 0.97046 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.29511 | 0.049 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.3095 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.33186 | 0.087 |
Manapal/WT (break) | 1.20925 | 0.381 |
Manapal/WT (red) | 0.85823 | 0.315 |
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