Expression of 1-1-2.4.7.13

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.686570.073
27DAP/17DAP0.96810.964
39DAP/27DAP2.280630.046
41DAP/39DAP0.854590.392
42DAP/41DAP0.829020.774
43DAP/42DAP1.102870.968
47DAP/43DAP0.85250.533
52DAP/47DAP1.206730.757
57DAP/52DAP1.150630.944

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.9870.63
17DAP/reference1.07190.282
27DAP/reference0.86750.092
39DAP/reference1.012230.871
41DAP/reference1.106940.187
42DAP/reference0.84690.02
43DAP/reference0.956570.48
47DAP/reference0.882830.046
52DAP/reference0.791170.058
57DAP/reference0.746230.014

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.003170.871
27DAP/17DAP1.176680.5
39DAP/27DAP0.972380.87
41DAP/39DAP0.844650.446
42DAP/41DAP1.2630.036
43DAP/42DAP1.043460.554
47DAP/43DAP1.042730.906
52DAP/47DAP0.920230.71
57DAP/52DAP0.918090.349
57DAP/7DAP1.197981

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.201330.095
17DAP/reference1.091060.221
27DAP/reference1.155270.041
39DAP/reference0.9290.073
41DAP/reference1.050580.336
42DAP/reference1.210270.1
43DAP/reference1.093970.132
47DAP/reference0.960830.504
52DAP/reference1.230330.026
57DAP/reference1.218630.006

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.071880.438
17DAP/reference1.094230.21
27DAP/reference0.955020.366
39DAP/reference0.91950.152
41DAP/reference0.914680.156
42DAP/reference0.967630.355
43DAP/reference1.011360.892
47DAP/reference0.854070.025
52DAP/reference0.867120.04
57DAP/reference1.119640.007

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.241170.016
17DAP/reference0.93120.177
27DAP/reference0.958780.126
39DAP/reference1.078130.264
41DAP/reference1.133450.108
42DAP/reference1.021470.893
43DAP/reference0.933130.348
47DAP/reference0.934010.097
52DAP/reference1.070.509
57DAP/reference0.849490.104

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.893511
26DAP/20DAP0.975431
34DAP/26DAP1.061381
51DAP/34DAP1.829120.025
52DAP/51DAP0.896261
53DAP/52DAP1.335480.319
55DAP/53DAP0.802380.154
57DAP/55DAP1.034670.955
62DAP/57DAP0.982680.994
68DAP/62DAP0.872510.609
68DAP/14DAP0.70310.09

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.522680.03

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.989550.658
Mature Green Tomato/Ripe Tomato0.71205
Immature Eggplant/Mature Eggplant1.15833
Ripe Pepper/Ripe Tomato1.711740.258
Mature Eggplant/Ripe Tomato1.112110.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.757080.536
1-1-2/M820.84251
12-2/M820.89257
12-4/M820.821730.358
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M820.79085
3-2/M821.004951
4-1-1/M820.3597
4-1/M820.94939
4-3-2/M820.839040.487
4-3/M821.19136
5-3/M821.148860.572
6-2/M82N/AN/A
6-3/M821.32081
7-1/M820.77197
7-2/M82N/AN/A
9-3-2/M821.09722

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.10220.277
IL2-6/WTpooled1.026740.659
IL7-5/WTpooled1.005491
IL7-3/WTpooled1.127740.362
IL12-4/WTpooled1.013730.891
IL1-4/WTpooled0.9961
WT/WTpooled1.009941

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.864550.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.923170.839
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.24311
DC3000/delta hrp 24h0.708130.085

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.94024
DC3000 delta B/DC3000 delta AB0.881020.087

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.014171
Var 0h1.016931
Var 12h I row2-row11.146150.58
Var 12h NI row2-row11.130890.649
Var 36h I row2-row11.17120.305
Var 36h NI row2-row10.867830.584
Var 60h I row2-row10.769570.306
Var 60h NI row2-row11.007571
Time course 0hI-0hNI1.126860.603
Time course 12hI-12hNI1.134060.26
Time course 36hI-36hNI1.385460.011
Time course 60hI-60hNI2.40250.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.939110.314
transgenic ySAMdc/azygous control (breaker)0.984641
transgenic ySAMdc/azygous control (red)0.970461

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.295110.049

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.30950.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.331860.087
Manapal/WT (break)1.209250.381
Manapal/WT (red)0.858230.315