Expression of 1-1-2.4.7.4
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.15745 | 0.615 |
27DAP/17DAP | 1.11022 | 0.874 |
39DAP/27DAP | 0.92103 | 0.583 |
41DAP/39DAP | 0.96506 | 0.854 |
42DAP/41DAP | 0.87794 | 1 |
43DAP/42DAP | 1.06325 | 0.993 |
47DAP/43DAP | 0.93216 | 0.746 |
52DAP/47DAP | 1.07529 | 0.902 |
57DAP/52DAP | 1.11281 | 0.904 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.82053 | 0.029 |
17DAP/reference | 0.90968 | 0.111 |
27DAP/reference | 1.01321 | 0.88 |
39DAP/reference | 0.99517 | 0.921 |
41DAP/reference | 0.93962 | 0.542 |
42DAP/reference | 0.96019 | 0.139 |
43DAP/reference | 1.02491 | 0.787 |
47DAP/reference | 0.99372 | 0.602 |
52DAP/reference | 1.03673 | 0.498 |
57DAP/reference | 1.07386 | 0.136 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.97878 | 0.75 |
27DAP/17DAP | 1.04844 | 0.924 |
39DAP/27DAP | 0.95779 | 0.747 |
41DAP/39DAP | 1.04948 | 0.853 |
42DAP/41DAP | 0.97884 | 0.784 |
43DAP/42DAP | 0.93638 | 0.447 |
47DAP/43DAP | 1.05767 | 0.837 |
52DAP/47DAP | 0.96445 | 0.901 |
57DAP/52DAP | 0.97148 | 0.695 |
57DAP/7DAP | 0.93342 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.76772 | 0.082 |
17DAP/reference | 0.833 | 0.082 |
27DAP/reference | 1.07112 | 0.301 |
39DAP/reference | 0.96285 | 0.307 |
41DAP/reference | 0.83754 | 0.054 |
42DAP/reference | 0.88797 | 0.04 |
43DAP/reference | 0.7177 | 0.013 |
47DAP/reference | 1.07971 | 0.659 |
52DAP/reference | 0.81962 | 0.04 |
57DAP/reference | 0.85626 | 0.021 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.85094 | 0.029 |
17DAP/reference | 0.6966 | 0.009 |
27DAP/reference | 1.00562 | 1 |
39DAP/reference | 1.16925 | 0.272 |
41DAP/reference | 1.43683 | 0.01 |
42DAP/reference | 1.15304 | 0.121 |
43DAP/reference | 1.00704 | 0.657 |
47DAP/reference | 1.0713 | 0.105 |
52DAP/reference | 1.31509 | 0.01 |
57DAP/reference | 1.38662 | 0.094 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.78283 | 0.041 |
17DAP/reference | 0.94095 | 0.462 |
27DAP/reference | 0.95762 | 0.23 |
39DAP/reference | 1.02571 | 0.912 |
41DAP/reference | 0.8568 | 0.026 |
42DAP/reference | 0.90606 | 0.287 |
43DAP/reference | 0.88742 | 0.256 |
47DAP/reference | 1.29388 | 0.093 |
52DAP/reference | 1.00733 | 0.888 |
57DAP/reference | 1.54304 | 0.009 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.12281 | 0.966 |
26DAP/20DAP | 0.90897 | 0.512 |
34DAP/26DAP | 0.88015 | 0.462 |
51DAP/34DAP | 0.98624 | 0.917 |
52DAP/51DAP | 1.21982 | 0.15 |
53DAP/52DAP | 0.93604 | 0.621 |
55DAP/53DAP | 0.99606 | 0.925 |
57DAP/55DAP | 0.86687 | 0.458 |
62DAP/57DAP | 1.10823 | 0.833 |
68DAP/62DAP | 1.39318 | 0.026 |
68DAP/14DAP | 1.33599 | 0.057 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.81505 | 0.097 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 2.16543 | 0.018 |
Immature Eggplant/Mature Eggplant | 2.18834 | 0.051 |
Ripe Pepper/Ripe Tomato | 0.30073 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.35428 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.45223 | 0.277 |
IL2-6/WTpooled | 0.71828 | 0.383 |
IL7-5/WTpooled | 0.98173 | 1 |
IL7-3/WTpooled | 1.15405 | 1 |
IL12-4/WTpooled | 0.88655 | 0.581 |
IL1-4/WTpooled | 0.96978 | 0.834 |
WT/WTpooled | 1.05113 | 0.89 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.83153 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.87289 | |
DC3000/delta hrp 6h | 0.96493 | 0.95 |
DC3000/delta hrp 12h | 1.02052 | 1 |
DC3000/delta hrp 24h | N/A | N/A |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.75377 | 0.033 |
DC3000 delta B/DC3000 delta AB | 0.90066 | 0.223 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.002 | 1 |
Var 0h | 0.93792 | 0.933 |
Var 12h I row2-row1 | 0.77214 | 0.363 |
Var 12h NI row2-row1 | 0.95677 | 0.627 |
Var 36h I row2-row1 | 0.93482 | 1 |
Var 36h NI row2-row1 | 1.73912 | 1 |
Var 60h I row2-row1 | 1.19823 | 0.562 |
Var 60h NI row2-row1 | 1.05978 | 0.904 |
Time course 0hI-0hNI | 0.96299 | 0.758 |
Time course 12hI-12hNI | 0.94001 | 0.41 |
Time course 36hI-36hNI | 0.7861 | 0.024 |
Time course 60hI-60hNI | 0.30553 | 0.005 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.83621 | 0.324 |
transgenic ySAMdc/azygous control (breaker) | 0.99297 | 1 |
transgenic ySAMdc/azygous control (red) | 1.12206 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.94819 | 0.05 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.36701 | 0.233 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.82838 | 1 |
Manapal/WT (break) | 0.81299 | 0.299 |
Manapal/WT (red) | 1.42853 | 0.222 |
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