Expression of 1-1-2.4.7.4

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.157450.615
27DAP/17DAP1.110220.874
39DAP/27DAP0.921030.583
41DAP/39DAP0.965060.854
42DAP/41DAP0.877941
43DAP/42DAP1.063250.993
47DAP/43DAP0.932160.746
52DAP/47DAP1.075290.902
57DAP/52DAP1.112810.904

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.820530.029
17DAP/reference0.909680.111
27DAP/reference1.013210.88
39DAP/reference0.995170.921
41DAP/reference0.939620.542
42DAP/reference0.960190.139
43DAP/reference1.024910.787
47DAP/reference0.993720.602
52DAP/reference1.036730.498
57DAP/reference1.073860.136

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.978780.75
27DAP/17DAP1.048440.924
39DAP/27DAP0.957790.747
41DAP/39DAP1.049480.853
42DAP/41DAP0.978840.784
43DAP/42DAP0.936380.447
47DAP/43DAP1.057670.837
52DAP/47DAP0.964450.901
57DAP/52DAP0.971480.695
57DAP/7DAP0.933421

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.767720.082
17DAP/reference0.8330.082
27DAP/reference1.071120.301
39DAP/reference0.962850.307
41DAP/reference0.837540.054
42DAP/reference0.887970.04
43DAP/reference0.71770.013
47DAP/reference1.079710.659
52DAP/reference0.819620.04
57DAP/reference0.856260.021

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.850940.029
17DAP/reference0.69660.009
27DAP/reference1.005621
39DAP/reference1.169250.272
41DAP/reference1.436830.01
42DAP/reference1.153040.121
43DAP/reference1.007040.657
47DAP/reference1.07130.105
52DAP/reference1.315090.01
57DAP/reference1.386620.094

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.782830.041
17DAP/reference0.940950.462
27DAP/reference0.957620.23
39DAP/reference1.025710.912
41DAP/reference0.85680.026
42DAP/reference0.906060.287
43DAP/reference0.887420.256
47DAP/reference1.293880.093
52DAP/reference1.007330.888
57DAP/reference1.543040.009

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.122810.966
26DAP/20DAP0.908970.512
34DAP/26DAP0.880150.462
51DAP/34DAP0.986240.917
52DAP/51DAP1.219820.15
53DAP/52DAP0.936040.621
55DAP/53DAP0.996060.925
57DAP/55DAP0.866870.458
62DAP/57DAP1.108230.833
68DAP/62DAP1.393180.026
68DAP/14DAP1.335990.057

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.815050.097

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato2.165430.018
Immature Eggplant/Mature Eggplant2.188340.051
Ripe Pepper/Ripe Tomato0.300730.224
Mature Eggplant/Ripe Tomato0.354280.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.452230.277
IL2-6/WTpooled0.718280.383
IL7-5/WTpooled0.981731
IL7-3/WTpooled1.154051
IL12-4/WTpooled0.886550.581
IL1-4/WTpooled0.969780.834
WT/WTpooled1.051130.89

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.831530.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.87289
DC3000/delta hrp 6h0.964930.95
DC3000/delta hrp 12h1.020521
DC3000/delta hrp 24hN/AN/A

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.753770.033
DC3000 delta B/DC3000 delta AB0.900660.223

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.0021
Var 0h0.937920.933
Var 12h I row2-row10.772140.363
Var 12h NI row2-row10.956770.627
Var 36h I row2-row10.934821
Var 36h NI row2-row11.739121
Var 60h I row2-row11.198230.562
Var 60h NI row2-row11.059780.904
Time course 0hI-0hNI0.962990.758
Time course 12hI-12hNI0.940010.41
Time course 36hI-36hNI0.78610.024
Time course 60hI-60hNI0.305530.005

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.836210.324
transgenic ySAMdc/azygous control (breaker)0.992971
transgenic ySAMdc/azygous control (red)1.122060.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.948190.05

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.367010.233

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.828381
Manapal/WT (break)0.812990.299
Manapal/WT (red)1.428530.222