Expression of 1-1-2.4.9.11

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.517310.414
27DAP/17DAP1.047061
39DAP/27DAP1.002260.82
41DAP/39DAP0.841840.401
42DAP/41DAP1.305730.871
43DAP/42DAP1.076651
47DAP/43DAP1.108660.825
52DAP/47DAP1.043870.959
57DAP/52DAP1.034160.988

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.013650.76
17DAP/reference1.004460.74
27DAP/reference0.98190.525
39DAP/reference1.011280.76
41DAP/reference0.98510.667
42DAP/reference0.964210.225
43DAP/reference1.020840.617
47DAP/reference0.960720.392
52DAP/reference1.038970.286
57DAP/reference1.017420.802

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.983160.75
27DAP/17DAP0.980820.878
39DAP/27DAP0.974340.821
41DAP/39DAP1.010940.883
42DAP/41DAP0.974320.734
43DAP/42DAP1.01490.664
47DAP/43DAP1.013440.934
52DAP/47DAP1.025040.939
57DAP/52DAP0.964170.451
57DAP/7DAP1.00261

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.839280.077
17DAP/reference1.174220.328
27DAP/reference1.143880.073
39DAP/reference1.165040.086
41DAP/reference1.266760.052
42DAP/reference0.904440.123
43DAP/reference1.040440.83
47DAP/reference1.119560.514
52DAP/reference1.007960.74
57DAP/reference1.146040.07

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.062230.373
17DAP/reference1.089960.081
27DAP/reference1.051370.497
39DAP/reference1.07410.225
41DAP/reference1.040340.705
42DAP/reference1.012750.934
43DAP/reference1.069450.59
47DAP/reference1.018530.712
52DAP/reference1.070690.074
57DAP/reference1.058770.26

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.964510.526
17DAP/reference1.058930.283
27DAP/reference1.190830.046
39DAP/reference1.112460.094
41DAP/reference1.070480.439
42DAP/reference1.031380.775
43DAP/reference0.968320.503
47DAP/reference1.027240.901
52DAP/reference1.287970.499
57DAP/reference0.997980.842

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.966271
26DAP/20DAP0.971671
34DAP/26DAP1.083170.819
51DAP/34DAP0.935450.522
52DAP/51DAP0.991
53DAP/52DAP1.06822
55DAP/53DAPN/AN/A
57DAP/55DAP1.120930.05
62DAP/57DAP0.900270.162
68DAP/62DAP1.140620.383
68DAP/14DAP1.042410.656

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.942760.072

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.166290.058
Mature Green Tomato/Ripe Tomato1.149760.331
Immature Eggplant/Mature Eggplant0.752240.329
Ripe Pepper/Ripe Tomato0.787231
Mature Eggplant/Ripe Tomato0.700830.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.027010.877
1-1-2/M820.983981
12-2/M821.029131
12-4/M821.02171
1-3/M820.997741
2-1-1/M821.124510.457
2-1/M82N/AN/A
2-6/M820.99421
3-2/M821.11171
4-1-1/M820.979031
4-1/M820.87609
4-3-2/M821.07583
4-3/M821.084941
5-3/M821.067431
6-2/M821.058011
6-3/M820.978941
7-1/M820.993171
7-2/M820.981941
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.837790.348
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.066650.362
IL12-4/WTpooled1.236510.532
IL1-4/WTpooled0.94062
WT/WTpooled1.004451

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.05081

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.966451
DC3000/delta hrp 6h1.000430.95
DC3000/delta hrp 12h1.009051
DC3000/delta hrp 24h1.181720.308

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.994221
DC3000 delta B/DC3000 delta AB1.024490.665

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.98660.245
Exp 36h1.071841
Exp 60h0.938320.754

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.988381
Var 0h0.978781
Var 12h I row2-row11.022350.654
Var 12h NI row2-row10.891580.546
Var 36h I row2-row11.009281
Var 36h NI row2-row10.933630.584
Var 60h I row2-row11.159130.562
Var 60h NI row2-row11.191930.904
Time course 0hI-0hNI1.104780.764
Time course 12hI-12hNI1.005381
Time course 36hI-36hNI0.975890.559
Time course 60hI-60hNI1.140080.019

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.117740.347
transgenic ySAMdc/azygous control (breaker)1.018671
transgenic ySAMdc/azygous control (red)0.954061

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.9920.353

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.177380.237

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.761230.172
Manapal/WT (break)0.736490.299
Manapal/WT (red)0.990360.863