Expression of 1-1-2.4.9.12

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.911090.503
27DAP/17DAP1.160970.854
39DAP/27DAP0.817830.425
41DAP/39DAP1.688650.192
42DAP/41DAP1.164580.797
43DAP/42DAP0.900310.409
47DAP/43DAP0.918750.705
52DAP/47DAP1.106010.883
57DAP/52DAP1.055810.96

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.993470.707
17DAP/reference0.998591
27DAP/reference0.965830.349
39DAP/reference0.960660.342
41DAP/reference0.959020.267
42DAP/reference0.860740.006
43DAP/reference0.966760.594
47DAP/reference0.90.05
52DAP/reference0.8190.035
57DAP/reference0.752320.018

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.990690.801
27DAP/17DAP0.98360.919
39DAP/27DAP1.01710.793
41DAP/39DAP0.946990.793
42DAP/41DAP1.011880.999
43DAP/42DAP0.997111
47DAP/43DAP0.972210.805
52DAP/47DAP1.037530.919
57DAP/52DAP0.993830.852
57DAP/7DAP1.081311

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.920670.122
17DAP/reference0.949060.013
27DAP/reference0.926840.055
39DAP/reference0.909780.012
41DAP/reference0.880040.013
42DAP/reference0.867780.01
43DAP/reference0.928740.035
47DAP/reference0.964550.383
52DAP/reference0.883930.083
57DAP/reference0.895810.012

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.083180.181
17DAP/reference1.052590.406
27DAP/reference0.948590.352
39DAP/reference0.975770.485
41DAP/reference0.883740.021
42DAP/reference0.856110.013
43DAP/reference1.033250.751
47DAP/reference0.963840.188
52DAP/reference1.042450.559
57DAP/reference1.118490.334

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.004330.804
17DAP/reference0.972450.55
27DAP/reference0.950940.147
39DAP/reference0.925710.011
41DAP/reference0.930330.032
42DAP/reference0.882830.172
43DAP/reference0.834970.12
47DAP/reference0.958430.494
52DAP/reference0.890380.131
57DAP/reference0.588050.02

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.9571
26DAP/20DAP0.893720.512
34DAP/26DAP0.908320.61
51DAP/34DAP0.96670.747
52DAP/51DAP0.97021
53DAP/52DAP0.9695
55DAP/53DAP0.93790.675
57DAP/55DAP1.032830.986
62DAP/57DAP1.055550.833
68DAP/62DAP0.941130.747
68DAP/14DAP1.047340.87

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.856650.102

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.474850.089
Mature Green Tomato/Ripe Tomato1.177110.149
Immature Eggplant/Mature Eggplant1.085930.3
Ripe Pepper/Ripe Tomato1.651511
Mature Eggplant/Ripe Tomato0.849281

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.946970.638
1-1-2/M820.92553
12-2/M821.001011
12-4/M821.011751
1-3/M820.893520.441
2-1-1/M821.125980.457
2-1/M821.09007
2-6/M821.002721
3-2/M82N/AN/A
4-1-1/M820.993781
4-1/M820.95961
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M820.953890.49
6-2/M820.86660.497
6-3/M821.099991
7-1/M821.01783
7-2/M821.15144
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.13545
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooled1.4486
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.96491

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.924040.941
DC3000/delta hrp 6h0.940630.95
DC3000/delta hrp 12h1.085711
DC3000/delta hrp 24h1.017340.84

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.054080.29
DC3000 delta B/DC3000 delta AB0.997391

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.881860.328
Exp 36h0.983311
Exp 60h0.723240.249

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.98071
Var 0h1.219750.782
Var 12h I row2-row11.058640.348
Var 12h NI row2-row10.962450.906
Var 36h I row2-row10.94421
Var 36h NI row2-row10.859530.478
Var 60h I row2-row11.147110.562
Var 60h NI row2-row11.197040.904
Time course 0hI-0hNI1.077380.852
Time course 12hI-12hNI1.039160.811
Time course 36hI-36hNI0.944640.246
Time course 60hI-60hNI1.251750.019

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.959060.722
transgenic ySAMdc/azygous control (breaker)1.237480.172
transgenic ySAMdc/azygous control (red)0.875451

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.999870.967

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.730260.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.898211
Manapal/WT (break)0.976441
Manapal/WT (red)0.811550.188