Expression of 1-1-2.4.9.12
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.91109 | 0.503 |
27DAP/17DAP | 1.16097 | 0.854 |
39DAP/27DAP | 0.81783 | 0.425 |
41DAP/39DAP | 1.68865 | 0.192 |
42DAP/41DAP | 1.16458 | 0.797 |
43DAP/42DAP | 0.90031 | 0.409 |
47DAP/43DAP | 0.91875 | 0.705 |
52DAP/47DAP | 1.10601 | 0.883 |
57DAP/52DAP | 1.05581 | 0.96 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99347 | 0.707 |
17DAP/reference | 0.99859 | 1 |
27DAP/reference | 0.96583 | 0.349 |
39DAP/reference | 0.96066 | 0.342 |
41DAP/reference | 0.95902 | 0.267 |
42DAP/reference | 0.86074 | 0.006 |
43DAP/reference | 0.96676 | 0.594 |
47DAP/reference | 0.9 | 0.05 |
52DAP/reference | 0.819 | 0.035 |
57DAP/reference | 0.75232 | 0.018 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.99069 | 0.801 |
27DAP/17DAP | 0.9836 | 0.919 |
39DAP/27DAP | 1.0171 | 0.793 |
41DAP/39DAP | 0.94699 | 0.793 |
42DAP/41DAP | 1.01188 | 0.999 |
43DAP/42DAP | 0.99711 | 1 |
47DAP/43DAP | 0.97221 | 0.805 |
52DAP/47DAP | 1.03753 | 0.919 |
57DAP/52DAP | 0.99383 | 0.852 |
57DAP/7DAP | 1.08131 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.92067 | 0.122 |
17DAP/reference | 0.94906 | 0.013 |
27DAP/reference | 0.92684 | 0.055 |
39DAP/reference | 0.90978 | 0.012 |
41DAP/reference | 0.88004 | 0.013 |
42DAP/reference | 0.86778 | 0.01 |
43DAP/reference | 0.92874 | 0.035 |
47DAP/reference | 0.96455 | 0.383 |
52DAP/reference | 0.88393 | 0.083 |
57DAP/reference | 0.89581 | 0.012 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.08318 | 0.181 |
17DAP/reference | 1.05259 | 0.406 |
27DAP/reference | 0.94859 | 0.352 |
39DAP/reference | 0.97577 | 0.485 |
41DAP/reference | 0.88374 | 0.021 |
42DAP/reference | 0.85611 | 0.013 |
43DAP/reference | 1.03325 | 0.751 |
47DAP/reference | 0.96384 | 0.188 |
52DAP/reference | 1.04245 | 0.559 |
57DAP/reference | 1.11849 | 0.334 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00433 | 0.804 |
17DAP/reference | 0.97245 | 0.55 |
27DAP/reference | 0.95094 | 0.147 |
39DAP/reference | 0.92571 | 0.011 |
41DAP/reference | 0.93033 | 0.032 |
42DAP/reference | 0.88283 | 0.172 |
43DAP/reference | 0.83497 | 0.12 |
47DAP/reference | 0.95843 | 0.494 |
52DAP/reference | 0.89038 | 0.131 |
57DAP/reference | 0.58805 | 0.02 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.957 | 1 |
26DAP/20DAP | 0.89372 | 0.512 |
34DAP/26DAP | 0.90832 | 0.61 |
51DAP/34DAP | 0.9667 | 0.747 |
52DAP/51DAP | 0.9702 | 1 |
53DAP/52DAP | 0.9695 | |
55DAP/53DAP | 0.9379 | 0.675 |
57DAP/55DAP | 1.03283 | 0.986 |
62DAP/57DAP | 1.05555 | 0.833 |
68DAP/62DAP | 0.94113 | 0.747 |
68DAP/14DAP | 1.04734 | 0.87 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.85665 | 0.102 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.47485 | 0.089 |
Mature Green Tomato/Ripe Tomato | 1.17711 | 0.149 |
Immature Eggplant/Mature Eggplant | 1.08593 | 0.3 |
Ripe Pepper/Ripe Tomato | 1.65151 | 1 |
Mature Eggplant/Ripe Tomato | 0.84928 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.94697 | 0.638 |
1-1-2/M82 | 0.92553 | |
12-2/M82 | 1.00101 | 1 |
12-4/M82 | 1.01175 | 1 |
1-3/M82 | 0.89352 | 0.441 |
2-1-1/M82 | 1.12598 | 0.457 |
2-1/M82 | 1.09007 | |
2-6/M82 | 1.00272 | 1 |
3-2/M82 | N/A | N/A |
4-1-1/M82 | 0.99378 | 1 |
4-1/M82 | 0.95961 | |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | 0.95389 | 0.49 |
6-2/M82 | 0.8666 | 0.497 |
6-3/M82 | 1.09999 | 1 |
7-1/M82 | 1.01783 | |
7-2/M82 | 1.15144 | |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.13545 | |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | 1.4486 | |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.9649 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.92404 | 0.941 |
DC3000/delta hrp 6h | 0.94063 | 0.95 |
DC3000/delta hrp 12h | 1.08571 | 1 |
DC3000/delta hrp 24h | 1.01734 | 0.84 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.05408 | 0.29 |
DC3000 delta B/DC3000 delta AB | 0.99739 | 1 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.88186 | 0.328 |
Exp 36h | 0.98331 | 1 |
Exp 60h | 0.72324 | 0.249 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.9807 | 1 |
Var 0h | 1.21975 | 0.782 |
Var 12h I row2-row1 | 1.05864 | 0.348 |
Var 12h NI row2-row1 | 0.96245 | 0.906 |
Var 36h I row2-row1 | 0.9442 | 1 |
Var 36h NI row2-row1 | 0.85953 | 0.478 |
Var 60h I row2-row1 | 1.14711 | 0.562 |
Var 60h NI row2-row1 | 1.19704 | 0.904 |
Time course 0hI-0hNI | 1.07738 | 0.852 |
Time course 12hI-12hNI | 1.03916 | 0.811 |
Time course 36hI-36hNI | 0.94464 | 0.246 |
Time course 60hI-60hNI | 1.25175 | 0.019 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.95906 | 0.722 |
transgenic ySAMdc/azygous control (breaker) | 1.23748 | 0.172 |
transgenic ySAMdc/azygous control (red) | 0.87545 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.99987 | 0.967 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.73026 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.89821 | 1 |
Manapal/WT (break) | 0.97644 | 1 |
Manapal/WT (red) | 0.81155 | 0.188 |
|
|