Expression of 1-1-2.4.9.19
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.02677 | 0.964 |
27DAP/17DAP | 1.0058 | 1 |
39DAP/27DAP | 1.01636 | 1 |
41DAP/39DAP | 0.96268 | 0.727 |
42DAP/41DAP | 1.01904 | 1 |
43DAP/42DAP | 1.04935 | 1 |
47DAP/43DAP | 1.06813 | 0.415 |
52DAP/47DAP | 1.02379 | 0.943 |
57DAP/52DAP | 0.93022 | 0.89 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.0414 | 0.71 |
17DAP/reference | 1.01029 | 0.585 |
27DAP/reference | 1.01263 | 0.709 |
39DAP/reference | 1.07083 | 0.343 |
41DAP/reference | 1.03332 | 0.265 |
42DAP/reference | 1.04995 | 0.125 |
43DAP/reference | 1.01293 | 0.758 |
47DAP/reference | 1.06447 | 0.065 |
52DAP/reference | 1.10279 | 0.023 |
57DAP/reference | 1.08829 | 0.028 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.01523 | 0.899 |
27DAP/17DAP | 0.98323 | 0.887 |
39DAP/27DAP | 0.98038 | 0.812 |
41DAP/39DAP | 1.06113 | 0.763 |
42DAP/41DAP | 0.98359 | 0.825 |
43DAP/42DAP | 0.97355 | 0.729 |
47DAP/43DAP | 0.99169 | 0.961 |
52DAP/47DAP | 1.00043 | |
57DAP/52DAP | 1.01796 | 0.978 |
57DAP/7DAP | 0.8308 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.06522 | 0.377 |
17DAP/reference | 1.07207 | 0.007 |
27DAP/reference | 1.10128 | 0.088 |
39DAP/reference | 1.05213 | 0.486 |
41DAP/reference | 1.02461 | 0.745 |
42DAP/reference | 1.02068 | 0.534 |
43DAP/reference | 1.03248 | 0.483 |
47DAP/reference | 0.96365 | 0.383 |
52DAP/reference | 1.04953 | 0.732 |
57DAP/reference | 1.03554 | 0.082 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.0268 | 0.569 |
17DAP/reference | 1.05612 | 0.33 |
27DAP/reference | 1.02977 | 0.974 |
39DAP/reference | 1.09281 | 0.233 |
41DAP/reference | 1.01848 | 1 |
42DAP/reference | 1.00612 | 1 |
43DAP/reference | 1.03792 | 0.704 |
47DAP/reference | 0.98789 | 0.277 |
52DAP/reference | 1.02486 | 0.343 |
57DAP/reference | 1.002 | 0.916 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.05788 | 0.258 |
17DAP/reference | 1.0114 | 0.833 |
27DAP/reference | 1.08524 | 0.092 |
39DAP/reference | 1.07983 | 0.025 |
41DAP/reference | 1.00879 | 1 |
42DAP/reference | 1.13198 | 0.086 |
43DAP/reference | 1.10578 | 0.27 |
47DAP/reference | 1.00129 | 1 |
52DAP/reference | 1.123 | 0.144 |
57DAP/reference | 1.08408 | 0.511 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.00783 | 1 |
26DAP/20DAP | 1.07017 | 0.707 |
34DAP/26DAP | 1.03472 | 1 |
51DAP/34DAP | 0.95575 | 0.667 |
52DAP/51DAP | 0.99521 | 1 |
53DAP/52DAP | N/A | N/A |
55DAP/53DAP | 1.04428 | |
57DAP/55DAP | 0.97896 | 0.925 |
62DAP/57DAP | 1.03589 | 0.003 |
68DAP/62DAP | 0.81069 | 0.245 |
68DAP/14DAP | 1.21301 | 0.094 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.09615 | 0.347 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.59714 | 0.162 |
Mature Green Tomato/Ripe Tomato | 0.90399 | 0.446 |
Immature Eggplant/Mature Eggplant | 1.91723 | 0.05 |
Ripe Pepper/Ripe Tomato | 1.21616 | 1 |
Mature Eggplant/Ripe Tomato | 0.70584 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.07472 | 1 |
1-1-2/M82 | 0.99603 | 1 |
12-2/M82 | 0.98216 | 1 |
12-4/M82 | 0.96773 | 1 |
1-3/M82 | 0.9715 | 1 |
2-1-1/M82 | 0.93837 | 0.784 |
2-1/M82 | 1.04873 | 1 |
2-6/M82 | 0.92613 | 1 |
3-2/M82 | 1.02758 | 1 |
4-1-1/M82 | 1.10471 | 1 |
4-1/M82 | 0.84377 | 1 |
4-3-2/M82 | 1.00786 | 1 |
4-3/M82 | 0.84128 | 1 |
5-3/M82 | 0.97627 | 1 |
6-2/M82 | 0.94302 | 1 |
6-3/M82 | 1.01225 | 1 |
7-1/M82 | 1.07694 | 0.598 |
7-2/M82 | 0.86898 | |
9-3-2/M82 | 0.83779 | 0.355 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.97541 | 1 |
IL2-6/WTpooled | 1.03623 | 1 |
IL7-5/WTpooled | 0.92058 | 1 |
IL7-3/WTpooled | 0.99039 | 1 |
IL12-4/WTpooled | 0.95018 | 1 |
IL1-4/WTpooled | 0.79505 | 0.476 |
WT/WTpooled | 0.92904 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.1633 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.95501 | 1 |
DC3000/delta hrp 6h | 1.77778 | 1 |
DC3000/delta hrp 12h | 0.94512 | 1 |
DC3000/delta hrp 24h | 0.9961 | 1 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.21939 | 0.042 |
DC3000 delta B/DC3000 delta AB | 1.06186 | 0.479 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | 1.04943 | 1 |
Exp 60h | 1.39273 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.96036 | 1 |
Var 0h | 1.12146 | 0.339 |
Var 12h I row2-row1 | 1.30365 | 0.215 |
Var 12h NI row2-row1 | 0.91531 | 0.627 |
Var 36h I row2-row1 | 0.99477 | 1 |
Var 36h NI row2-row1 | 0.88485 | 0.645 |
Var 60h I row2-row1 | 1.11061 | 1 |
Var 60h NI row2-row1 | 1.17579 | 0.904 |
Time course 0hI-0hNI | 1.05076 | 1 |
Time course 12hI-12hNI | 1.00689 | 1 |
Time course 36hI-36hNI | 1.08849 | 0.147 |
Time course 60hI-60hNI | 1.64844 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.79297 | 0.246 |
transgenic ySAMdc/azygous control (breaker) | 1.65165 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.16799 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.03144 | 0.213 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.91472 | 0.308 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.13168 | 1 |
Manapal/WT (break) | 1.08926 | 0.381 |
Manapal/WT (red) | 0.99072 | 0.863 |
|
|