Expression of 1-1-2.4.9.19

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.026770.964
27DAP/17DAP1.00581
39DAP/27DAP1.016361
41DAP/39DAP0.962680.727
42DAP/41DAP1.019041
43DAP/42DAP1.049351
47DAP/43DAP1.068130.415
52DAP/47DAP1.023790.943
57DAP/52DAP0.930220.89

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.04140.71
17DAP/reference1.010290.585
27DAP/reference1.012630.709
39DAP/reference1.070830.343
41DAP/reference1.033320.265
42DAP/reference1.049950.125
43DAP/reference1.012930.758
47DAP/reference1.064470.065
52DAP/reference1.102790.023
57DAP/reference1.088290.028

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.015230.899
27DAP/17DAP0.983230.887
39DAP/27DAP0.980380.812
41DAP/39DAP1.061130.763
42DAP/41DAP0.983590.825
43DAP/42DAP0.973550.729
47DAP/43DAP0.991690.961
52DAP/47DAP1.00043
57DAP/52DAP1.017960.978
57DAP/7DAP0.8308

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.065220.377
17DAP/reference1.072070.007
27DAP/reference1.101280.088
39DAP/reference1.052130.486
41DAP/reference1.024610.745
42DAP/reference1.020680.534
43DAP/reference1.032480.483
47DAP/reference0.963650.383
52DAP/reference1.049530.732
57DAP/reference1.035540.082

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.02680.569
17DAP/reference1.056120.33
27DAP/reference1.029770.974
39DAP/reference1.092810.233
41DAP/reference1.018481
42DAP/reference1.006121
43DAP/reference1.037920.704
47DAP/reference0.987890.277
52DAP/reference1.024860.343
57DAP/reference1.0020.916

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.057880.258
17DAP/reference1.01140.833
27DAP/reference1.085240.092
39DAP/reference1.079830.025
41DAP/reference1.008791
42DAP/reference1.131980.086
43DAP/reference1.105780.27
47DAP/reference1.001291
52DAP/reference1.1230.144
57DAP/reference1.084080.511

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.007831
26DAP/20DAP1.070170.707
34DAP/26DAP1.034721
51DAP/34DAP0.955750.667
52DAP/51DAP0.995211
53DAP/52DAPN/AN/A
55DAP/53DAP1.04428
57DAP/55DAP0.978960.925
62DAP/57DAP1.035890.003
68DAP/62DAP0.810690.245
68DAP/14DAP1.213010.094

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.096150.347

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.597140.162
Mature Green Tomato/Ripe Tomato0.903990.446
Immature Eggplant/Mature Eggplant1.917230.05
Ripe Pepper/Ripe Tomato1.216161
Mature Eggplant/Ripe Tomato0.705841

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.074721
1-1-2/M820.996031
12-2/M820.982161
12-4/M820.967731
1-3/M820.97151
2-1-1/M820.938370.784
2-1/M821.048731
2-6/M820.926131
3-2/M821.027581
4-1-1/M821.104711
4-1/M820.843771
4-3-2/M821.007861
4-3/M820.841281
5-3/M820.976271
6-2/M820.943021
6-3/M821.012251
7-1/M821.076940.598
7-2/M820.86898
9-3-2/M820.837790.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.975411
IL2-6/WTpooled1.036231
IL7-5/WTpooled0.920581
IL7-3/WTpooled0.990391
IL12-4/WTpooled0.950181
IL1-4/WTpooled0.795050.476
WT/WTpooled0.929041

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.16330.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.955011
DC3000/delta hrp 6h1.777781
DC3000/delta hrp 12h0.945121
DC3000/delta hrp 24h0.99611

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.219390.042
DC3000 delta B/DC3000 delta AB1.061860.479

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36h1.049431
Exp 60h1.392731

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.960361
Var 0h1.121460.339
Var 12h I row2-row11.303650.215
Var 12h NI row2-row10.915310.627
Var 36h I row2-row10.994771
Var 36h NI row2-row10.884850.645
Var 60h I row2-row11.110611
Var 60h NI row2-row11.175790.904
Time course 0hI-0hNI1.050761
Time course 12hI-12hNI1.006891
Time course 36hI-36hNI1.088490.147
Time course 60hI-60hNI1.648440.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.792970.246
transgenic ySAMdc/azygous control (breaker)1.651650.248
transgenic ySAMdc/azygous control (red)1.167990.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.031440.213

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.914720.308

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.131681
Manapal/WT (break)1.089260.381
Manapal/WT (red)0.990720.863