Expression of 1-1-3.1.1.12
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.15226 | 0.681 |
27DAP/17DAP | 0.7846 | 0.403 |
39DAP/27DAP | 1.67195 | 0.256 |
41DAP/39DAP | 0.51264 | 0.042 |
42DAP/41DAP | 1.02606 | 1 |
43DAP/42DAP | 0.98166 | 0.912 |
47DAP/43DAP | 0.73349 | 0.263 |
52DAP/47DAP | 0.96676 | 0.88 |
57DAP/52DAP | 1.59138 | 0.638 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.41687 | 0.007 |
17DAP/reference | 1.33673 | 0.019 |
27DAP/reference | 1.34623 | 0.015 |
39DAP/reference | 1.1061 | 0.504 |
41DAP/reference | 0.98005 | 0.667 |
42DAP/reference | 1.42912 | 0.001 |
43DAP/reference | 1.15209 | 0.053 |
47DAP/reference | 1.17438 | 0.004 |
52DAP/reference | 1.08434 | 0.84 |
57DAP/reference | 1.21317 | 0.021 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.63526 | 0.036 |
27DAP/17DAP | 0.97755 | 0.821 |
39DAP/27DAP | 0.76798 | 0.051 |
41DAP/39DAP | 1.25455 | 0.748 |
42DAP/41DAP | 0.93389 | 0.511 |
43DAP/42DAP | 0.63932 | 0.022 |
47DAP/43DAP | 0.92938 | 0.395 |
52DAP/47DAP | 0.84552 | 0.254 |
57DAP/52DAP | 0.95054 | 0.622 |
57DAP/7DAP | 0.7784 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.8246 | 0.025 |
17DAP/reference | 2.04536 | 0.006 |
27DAP/reference | 2.2248 | 0.006 |
39DAP/reference | 2.22342 | 0.005 |
41DAP/reference | 2.07791 | 0.008 |
42DAP/reference | 2.23568 | 0.006 |
43DAP/reference | 1.68426 | 0.007 |
47DAP/reference | 1.71861 | 0.014 |
52DAP/reference | 2.25107 | 0.007 |
57DAP/reference | 1.87613 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.0694 | 0.832 |
17DAP/reference | 1.67971 | 0.015 |
27DAP/reference | 2.07931 | 0.013 |
39DAP/reference | 1.87308 | 0.011 |
41DAP/reference | 1.72081 | 0.005 |
42DAP/reference | 1.77477 | 0.011 |
43DAP/reference | 1.38474 | 0.211 |
47DAP/reference | 1.50577 | 0.018 |
52DAP/reference | 1.1861 | 0.026 |
57DAP/reference | 1.0748 | 0.827 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.39946 | 0.025 |
17DAP/reference | 1.21382 | 0.241 |
27DAP/reference | 1.70565 | 0.016 |
39DAP/reference | 1.86545 | 0.005 |
41DAP/reference | 1.66401 | 0.007 |
42DAP/reference | 1.88126 | 0.007 |
43DAP/reference | 1.89314 | 0.012 |
47DAP/reference | 0.95373 | 0.421 |
52DAP/reference | 1.49802 | 0.06 |
57DAP/reference | 1.81461 | 0.02 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.9147 | 0.981 |
26DAP/20DAP | 1.49398 | 0.338 |
34DAP/26DAP | 1.08313 | 1 |
51DAP/34DAP | 0.54411 | 0.116 |
52DAP/51DAP | 1.03338 | 0.904 |
53DAP/52DAP | 0.91883 | 0.807 |
55DAP/53DAP | 0.87749 | 0.53 |
57DAP/55DAP | 0.84758 | 0.688 |
62DAP/57DAP | 1.44568 | 0.8 |
68DAP/62DAP | 1.76528 | 0.17 |
68DAP/14DAP | 2.58016 | 0.041 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 3.79108 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.63758 | 0.058 |
Mature Green Tomato/Ripe Tomato | 1.5892 | 0.021 |
Immature Eggplant/Mature Eggplant | 1.02254 | 0.439 |
Ripe Pepper/Ripe Tomato | 0.68004 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.55073 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.95439 | 0.944 |
1-1-2/M82 | N/A | N/A |
12-2/M82 | 0.90739 | 0.955 |
12-4/M82 | 1.10783 | 1 |
1-3/M82 | 2.27772 | 0.248 |
2-1-1/M82 | 1.05058 | 1 |
2-1/M82 | 0.7105 | 0.74 |
2-6/M82 | 1.0201 | 1 |
3-2/M82 | 1.00598 | 1 |
4-1-1/M82 | 1.27362 | 1 |
4-1/M82 | 0.68882 | |
4-3-2/M82 | 1.66667 | 0.241 |
4-3/M82 | 1.50471 | 0.268 |
5-3/M82 | 1.1828 | 0.467 |
6-2/M82 | N/A | N/A |
6-3/M82 | 0.60168 | 0.857 |
7-1/M82 | 0.87501 | 0.803 |
7-2/M82 | 1.50511 | 0.385 |
9-3-2/M82 | 1.33062 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.12433 | 0.493 |
IL2-6/WTpooled | 1.2481 | 0.659 |
IL7-5/WTpooled | 0.73265 | 0.25 |
IL7-3/WTpooled | 1.23595 | |
IL12-4/WTpooled | 0.97341 | 1 |
IL1-4/WTpooled | 1.00741 | 1 |
WT/WTpooled | 0.92136 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.96395 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.10144 | 0.692 |
DC3000/delta hrp 6h | 0.98621 | 0.95 |
DC3000/delta hrp 12h | 1.10168 | 1 |
DC3000/delta hrp 24h | 0.87213 | 0.264 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.10745 | 0.355 |
DC3000 delta B/DC3000 delta AB | 1.14937 | 0.321 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.98298 | 1 |
Exp 36h | 1.11562 | 1 |
Exp 60h | 0.88493 | 0.754 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00626 | 1 |
Var 0h | 0.94223 | 1 |
Var 12h I row2-row1 | 0.91911 | 0.77 |
Var 12h NI row2-row1 | 1.31007 | 0.649 |
Var 36h I row2-row1 | 1.09021 | 0.601 |
Var 36h NI row2-row1 | 0.85318 | 0.61 |
Var 60h I row2-row1 | 0.97387 | 1 |
Var 60h NI row2-row1 | 0.78896 | 0.38 |
Time course 0hI-0hNI | 0.85159 | 0.102 |
Time course 12hI-12hNI | 0.98401 | 0.893 |
Time course 36hI-36hNI | 1.29214 | 0.248 |
Time course 60hI-60hNI | 1.35026 | 0.033 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.07338 | 0.397 |
transgenic ySAMdc/azygous control (breaker) | 1.01125 | 1 |
transgenic ySAMdc/azygous control (red) | 1.17361 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.59718 | 0.036 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.89425 | 0.284 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.87664 | 1 |
Manapal/WT (break) | 0.98676 | 1 |
Manapal/WT (red) | 1.10476 | 0.222 |
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