Expression of 1-1-3.1.1.3
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.96242 | 0.743 |
27DAP/17DAP | 1.02554 | 0.911 |
39DAP/27DAP | 1.09058 | 0.692 |
41DAP/39DAP | 0.94762 | 0.781 |
42DAP/41DAP | 1.07533 | 0.938 |
43DAP/42DAP | 1.02242 | 1 |
47DAP/43DAP | 1.2363 | 0.448 |
52DAP/47DAP | 1.11187 | 0.758 |
57DAP/52DAP | 1.09938 | 0.935 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.08823 | 0.101 |
17DAP/reference | 1.04802 | 0.27 |
27DAP/reference | 1.19204 | 0.042 |
39DAP/reference | 0.98534 | 0.855 |
41DAP/reference | 1.15681 | 0.111 |
42DAP/reference | 1.39726 | 0.001 |
43DAP/reference | 1.09647 | 0.899 |
47DAP/reference | 1.3814 | 0.001 |
52DAP/reference | 1.13842 | 0.134 |
57DAP/reference | 1.0133 | 1 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.02176 | 0.728 |
27DAP/17DAP | 1.15152 | |
39DAP/27DAP | 0.97749 | 0.87 |
41DAP/39DAP | 0.94494 | 0.645 |
42DAP/41DAP | 0.99312 | 0.887 |
43DAP/42DAP | 0.99335 | 0.928 |
47DAP/43DAP | 1.02285 | 0.853 |
52DAP/47DAP | 0.98571 | 0.93 |
57DAP/52DAP | 0.99605 | 0.887 |
57DAP/7DAP | 0.99235 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00292 | 1 |
17DAP/reference | 0.99544 | 0.599 |
27DAP/reference | 0.95134 | 0.039 |
39DAP/reference | 1.00179 | 1 |
41DAP/reference | 1.00265 | 0.811 |
42DAP/reference | 1.04701 | 0.308 |
43DAP/reference | 1.01483 | 0.788 |
47DAP/reference | 1.09817 | 0.298 |
52DAP/reference | 1.03835 | 0.563 |
57DAP/reference | 0.9914 | 0.61 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.14902 | 0.139 |
17DAP/reference | 1.34987 | 0.01 |
27DAP/reference | 1.43429 | 0.031 |
39DAP/reference | 1.15661 | 0.436 |
41DAP/reference | 1.44286 | 0.012 |
42DAP/reference | 1.40495 | 0.008 |
43DAP/reference | 1.29812 | 0.208 |
47DAP/reference | 1.32725 | 0.008 |
52DAP/reference | 1.25589 | 0.01 |
57DAP/reference | 1.26231 | 0.029 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.01941 | 1 |
17DAP/reference | 1.11941 | 0.431 |
27DAP/reference | 0.95263 | 0.053 |
39DAP/reference | 0.99579 | 0.819 |
41DAP/reference | 0.94906 | 0.293 |
42DAP/reference | 1.06793 | 0.701 |
43DAP/reference | 1.25387 | 0.205 |
47DAP/reference | 1.34132 | 0.008 |
52DAP/reference | 1.03415 | 0.813 |
57DAP/reference | 1.30429 | 0.067 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.76078 | 0.585 |
26DAP/20DAP | 1.0023 | 1 |
34DAP/26DAP | 0.94967 | 0.795 |
51DAP/34DAP | 1.00771 | 0.988 |
52DAP/51DAP | 1.04669 | 0.626 |
53DAP/52DAP | N/A | N/A |
55DAP/53DAP | 1.01164 | 0.964 |
57DAP/55DAP | 0.91166 | 0.633 |
62DAP/57DAP | 2.12316 | 0.723 |
68DAP/62DAP | 0.67495 | 0.668 |
68DAP/14DAP | 0.81963 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.02412 | 0.496 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.23237 | 0.058 |
Mature Green Tomato/Ripe Tomato | 1.40039 | 0.04 |
Immature Eggplant/Mature Eggplant | 0.67449 | 0.066 |
Ripe Pepper/Ripe Tomato | 0.82126 | 0.293 |
Mature Eggplant/Ripe Tomato | 1.55253 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.02883 | 1 |
1-1-2/M82 | 1.46797 | |
12-2/M82 | 0.9936 | 1 |
12-4/M82 | 1.10723 | 1 |
1-3/M82 | 1.11938 | |
2-1-1/M82 | 0.99752 | 1 |
2-1/M82 | 1.01847 | |
2-6/M82 | 0.99515 | 1 |
3-2/M82 | 0.97571 | 1 |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 0.84371 | |
4-3-2/M82 | 1.1937 | |
4-3/M82 | 1.02822 | 1 |
5-3/M82 | 1.05248 | 1 |
6-2/M82 | 0.82614 | |
6-3/M82 | 1.10123 | 1 |
7-1/M82 | 0.88975 | 0.803 |
7-2/M82 | 1.08782 | 1 |
9-3-2/M82 | 1.03145 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.12629 | 0.277 |
IL2-6/WTpooled | 1.02314 | 1 |
IL7-5/WTpooled | 1.68452 | |
IL7-3/WTpooled | 0.7286 | 0.283 |
IL12-4/WTpooled | 0.88156 | 0.71 |
IL1-4/WTpooled | 1.1273 | 1 |
WT/WTpooled | 0.86553 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.0603 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.95186 | 1 |
DC3000/delta hrp 6h | 1.21853 | 0.777 |
DC3000/delta hrp 12h | 0.45372 | |
DC3000/delta hrp 24h | 1.10309 | 0.453 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.9505 | 0.66 |
DC3000 delta B/DC3000 delta AB | 0.94423 | 0.589 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.0972 | 1 |
Exp 36h | 0.89755 | 0.623 |
Exp 60h | 0.99288 | 0.994 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00034 | 1 |
Var 0h | 0.92536 | 1 |
Var 12h I row2-row1 | 1.0585 | 0.736 |
Var 12h NI row2-row1 | 1.01465 | 1 |
Var 36h I row2-row1 | 0.93743 | 0.805 |
Var 36h NI row2-row1 | 0.89944 | 0.522 |
Var 60h I row2-row1 | 1.04204 | 1 |
Var 60h NI row2-row1 | 1.05124 | 0.904 |
Time course 0hI-0hNI | 1.00814 | 1 |
Time course 12hI-12hNI | 0.99514 | 1 |
Time course 36hI-36hNI | 0.82426 | 0.041 |
Time course 60hI-60hNI | 0.85185 | 0.026 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.10191 | 0.455 |
transgenic ySAMdc/azygous control (breaker) | 0.77889 | 0.173 |
transgenic ySAMdc/azygous control (red) | 1.27949 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.12775 | 0.11 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.07056 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.77387 | 0.172 |
Manapal/WT (break) | 0.73972 | 0.333 |
Manapal/WT (red) | 0.76039 | 0.181 |
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