Expression of 1-1-3.1.1.3

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.962420.743
27DAP/17DAP1.025540.911
39DAP/27DAP1.090580.692
41DAP/39DAP0.947620.781
42DAP/41DAP1.075330.938
43DAP/42DAP1.022421
47DAP/43DAP1.23630.448
52DAP/47DAP1.111870.758
57DAP/52DAP1.099380.935

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.088230.101
17DAP/reference1.048020.27
27DAP/reference1.192040.042
39DAP/reference0.985340.855
41DAP/reference1.156810.111
42DAP/reference1.397260.001
43DAP/reference1.096470.899
47DAP/reference1.38140.001
52DAP/reference1.138420.134
57DAP/reference1.01331

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.021760.728
27DAP/17DAP1.15152
39DAP/27DAP0.977490.87
41DAP/39DAP0.944940.645
42DAP/41DAP0.993120.887
43DAP/42DAP0.993350.928
47DAP/43DAP1.022850.853
52DAP/47DAP0.985710.93
57DAP/52DAP0.996050.887
57DAP/7DAP0.992351

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.002921
17DAP/reference0.995440.599
27DAP/reference0.951340.039
39DAP/reference1.001791
41DAP/reference1.002650.811
42DAP/reference1.047010.308
43DAP/reference1.014830.788
47DAP/reference1.098170.298
52DAP/reference1.038350.563
57DAP/reference0.99140.61

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.149020.139
17DAP/reference1.349870.01
27DAP/reference1.434290.031
39DAP/reference1.156610.436
41DAP/reference1.442860.012
42DAP/reference1.404950.008
43DAP/reference1.298120.208
47DAP/reference1.327250.008
52DAP/reference1.255890.01
57DAP/reference1.262310.029

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.019411
17DAP/reference1.119410.431
27DAP/reference0.952630.053
39DAP/reference0.995790.819
41DAP/reference0.949060.293
42DAP/reference1.067930.701
43DAP/reference1.253870.205
47DAP/reference1.341320.008
52DAP/reference1.034150.813
57DAP/reference1.304290.067

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.760780.585
26DAP/20DAP1.00231
34DAP/26DAP0.949670.795
51DAP/34DAP1.007710.988
52DAP/51DAP1.046690.626
53DAP/52DAPN/AN/A
55DAP/53DAP1.011640.964
57DAP/55DAP0.911660.633
62DAP/57DAP2.123160.723
68DAP/62DAP0.674950.668
68DAP/14DAP0.819631

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.024120.496

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.232370.058
Mature Green Tomato/Ripe Tomato1.400390.04
Immature Eggplant/Mature Eggplant0.674490.066
Ripe Pepper/Ripe Tomato0.821260.293
Mature Eggplant/Ripe Tomato1.552530.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.028831
1-1-2/M821.46797
12-2/M820.99361
12-4/M821.107231
1-3/M821.11938
2-1-1/M820.997521
2-1/M821.01847
2-6/M820.995151
3-2/M820.975711
4-1-1/M82N/AN/A
4-1/M820.84371
4-3-2/M821.1937
4-3/M821.028221
5-3/M821.052481
6-2/M820.82614
6-3/M821.101231
7-1/M820.889750.803
7-2/M821.087821
9-3-2/M821.03145

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.126290.277
IL2-6/WTpooled1.023141
IL7-5/WTpooled1.68452
IL7-3/WTpooled0.72860.283
IL12-4/WTpooled0.881560.71
IL1-4/WTpooled1.12731
WT/WTpooled0.865531

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.06031

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.951861
DC3000/delta hrp 6h1.218530.777
DC3000/delta hrp 12h0.45372
DC3000/delta hrp 24h1.103090.453

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.95050.66
DC3000 delta B/DC3000 delta AB0.944230.589

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.09721
Exp 36h0.897550.623
Exp 60h0.992880.994

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.000341
Var 0h0.925361
Var 12h I row2-row11.05850.736
Var 12h NI row2-row11.014651
Var 36h I row2-row10.937430.805
Var 36h NI row2-row10.899440.522
Var 60h I row2-row11.042041
Var 60h NI row2-row11.051240.904
Time course 0hI-0hNI1.008141
Time course 12hI-12hNI0.995141
Time course 36hI-36hNI0.824260.041
Time course 60hI-60hNI0.851850.026

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.101910.455
transgenic ySAMdc/azygous control (breaker)0.778890.173
transgenic ySAMdc/azygous control (red)1.279490.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.127750.11

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.070561

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.773870.172
Manapal/WT (break)0.739720.333
Manapal/WT (red)0.760390.181