Expression of 1-1-3.1.10.12

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.84980.364
27DAP/17DAP0.958130.898
39DAP/27DAP1.371040.768
41DAP/39DAP0.868170.496
42DAP/41DAP2.884440.066
43DAP/42DAP0.998190.937
47DAP/43DAP1.129910.293
52DAP/47DAP0.822080.54
57DAP/52DAP1.197970.561

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.557240.01
17DAP/reference1.412560.013
27DAP/reference1.139940.156
39DAP/reference1.159220.186
41DAP/reference1.529360.013
42DAP/reference1.229680.008
43DAP/reference1.04770.866
47DAP/reference1.134150.114
52DAP/reference1.322420.096
57DAP/reference0.930760.294

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.000970.871
27DAP/17DAP0.918720.475
39DAP/27DAP1.0011
41DAP/39DAP1.052380.883
42DAP/41DAP0.962260.684
43DAP/42DAP1.001621
47DAP/43DAP1.111940.035
52DAP/47DAP1.028940.939
57DAP/52DAP0.982870.784
57DAP/7DAP1.073761

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.634130.024
17DAP/reference1.221650.112
27DAP/reference1.097540.551
39DAP/reference1.398320.032
41DAP/reference1.314040.025
42DAP/reference1.14690.132
43DAP/reference1.147710.178
47DAP/reference1.33960.036
52DAP/reference1.270560.01
57DAP/reference1.151580.125

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.330860.103
17DAP/reference1.679610.012
27DAP/reference1.954780.014
39DAP/reference1.659150.015
41DAP/reference1.11850.893
42DAP/reference1.553760.008
43DAP/reference1.09180.617
47DAP/reference1.596480.008
52DAP/reference1.073240.343
57DAP/reference1.324690.026

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.327340.09
17DAP/reference1.21670.362
27DAP/reference1.325310.029
39DAP/reference1.249940.081
41DAP/reference0.9680.56
42DAP/reference1.160210.327
43DAP/reference1.348880.047
47DAP/reference1.153670.519
52DAP/reference1.554670.082
57DAP/reference1.324610.083

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.906691
26DAP/20DAP1.244490.15
34DAP/26DAP0.873510.693
51DAP/34DAP0.805270.084
52DAP/51DAP1.115070.446
53DAP/52DAP0.893440.307
55DAP/53DAP0.838720.159
57DAP/55DAP1.035330.969
62DAP/57DAP1.062960.935
68DAP/62DAP0.758780.152
68DAP/14DAP1.030541

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker3.652190.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.977590.783
Mature Green Tomato/Ripe Tomato0.479520.018
Immature Eggplant/Mature Eggplant0.873280.254
Ripe Pepper/Ripe Tomato1.265761
Mature Eggplant/Ripe Tomato0.808030.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.005651
1-1-2/M820.99026
12-2/M820.95571
12-4/M820.983910.619
1-3/M821.546160.26
2-1-1/M820.99932
2-1/M821.059871
2-6/M820.873730.501
3-2/M821.28435
4-1-1/M820.50647
4-1/M82N/AN/A
4-3-2/M821.48505
4-3/M821.372991
5-3/M821.254220.572
6-2/M82N/AN/A
6-3/M820.867970.916
7-1/M820.953
7-2/M821.2340.324
9-3-2/M821.38855

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.046861
IL7-5/WTpooled1.047661
IL7-3/WTpooled0.974561
IL12-4/WTpooled0.421010.539
IL1-4/WTpooled0.626940.402
WT/WTpooled0.89981

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.005611

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.055540.921
DC3000/delta hrp 6h0.978270.95
DC3000/delta hrp 12h1.193651
DC3000/delta hrp 24h1.069760.655

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.670480.028
DC3000 delta B/DC3000 delta AB0.656630.02

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.76051
Exp 36h1.564740.693
Exp 60h1.318471

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h1.237510.594
Var 12h I row2-row10.73430.338
Var 12h NI row2-row11.026421
Var 36h I row2-row10.924120.805
Var 36h NI row2-row11.388941
Var 60h I row2-row11.008211
Var 60h NI row2-row10.950470.977
Time course 0hI-0hNI0.986771
Time course 12hI-12hNI0.975410.874
Time course 36hI-36hNI0.931360.366
Time course 60hI-60hNI0.296310.005

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.210120.325
transgenic ySAMdc/azygous control (breaker)0.836040.49
transgenic ySAMdc/azygous control (red)1.146210.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.901840.237

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.927590.35

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.042171
Manapal/WT (break)1.603490.183
Manapal/WT (red)0.949940.607