Expression of 1-1-3.1.10.12
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.8498 | 0.364 |
27DAP/17DAP | 0.95813 | 0.898 |
39DAP/27DAP | 1.37104 | 0.768 |
41DAP/39DAP | 0.86817 | 0.496 |
42DAP/41DAP | 2.88444 | 0.066 |
43DAP/42DAP | 0.99819 | 0.937 |
47DAP/43DAP | 1.12991 | 0.293 |
52DAP/47DAP | 0.82208 | 0.54 |
57DAP/52DAP | 1.19797 | 0.561 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.55724 | 0.01 |
17DAP/reference | 1.41256 | 0.013 |
27DAP/reference | 1.13994 | 0.156 |
39DAP/reference | 1.15922 | 0.186 |
41DAP/reference | 1.52936 | 0.013 |
42DAP/reference | 1.22968 | 0.008 |
43DAP/reference | 1.0477 | 0.866 |
47DAP/reference | 1.13415 | 0.114 |
52DAP/reference | 1.32242 | 0.096 |
57DAP/reference | 0.93076 | 0.294 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.00097 | 0.871 |
27DAP/17DAP | 0.91872 | 0.475 |
39DAP/27DAP | 1.001 | 1 |
41DAP/39DAP | 1.05238 | 0.883 |
42DAP/41DAP | 0.96226 | 0.684 |
43DAP/42DAP | 1.00162 | 1 |
47DAP/43DAP | 1.11194 | 0.035 |
52DAP/47DAP | 1.02894 | 0.939 |
57DAP/52DAP | 0.98287 | 0.784 |
57DAP/7DAP | 1.07376 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.63413 | 0.024 |
17DAP/reference | 1.22165 | 0.112 |
27DAP/reference | 1.09754 | 0.551 |
39DAP/reference | 1.39832 | 0.032 |
41DAP/reference | 1.31404 | 0.025 |
42DAP/reference | 1.1469 | 0.132 |
43DAP/reference | 1.14771 | 0.178 |
47DAP/reference | 1.3396 | 0.036 |
52DAP/reference | 1.27056 | 0.01 |
57DAP/reference | 1.15158 | 0.125 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.33086 | 0.103 |
17DAP/reference | 1.67961 | 0.012 |
27DAP/reference | 1.95478 | 0.014 |
39DAP/reference | 1.65915 | 0.015 |
41DAP/reference | 1.1185 | 0.893 |
42DAP/reference | 1.55376 | 0.008 |
43DAP/reference | 1.0918 | 0.617 |
47DAP/reference | 1.59648 | 0.008 |
52DAP/reference | 1.07324 | 0.343 |
57DAP/reference | 1.32469 | 0.026 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.32734 | 0.09 |
17DAP/reference | 1.2167 | 0.362 |
27DAP/reference | 1.32531 | 0.029 |
39DAP/reference | 1.24994 | 0.081 |
41DAP/reference | 0.968 | 0.56 |
42DAP/reference | 1.16021 | 0.327 |
43DAP/reference | 1.34888 | 0.047 |
47DAP/reference | 1.15367 | 0.519 |
52DAP/reference | 1.55467 | 0.082 |
57DAP/reference | 1.32461 | 0.083 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.90669 | 1 |
26DAP/20DAP | 1.24449 | 0.15 |
34DAP/26DAP | 0.87351 | 0.693 |
51DAP/34DAP | 0.80527 | 0.084 |
52DAP/51DAP | 1.11507 | 0.446 |
53DAP/52DAP | 0.89344 | 0.307 |
55DAP/53DAP | 0.83872 | 0.159 |
57DAP/55DAP | 1.03533 | 0.969 |
62DAP/57DAP | 1.06296 | 0.935 |
68DAP/62DAP | 0.75878 | 0.152 |
68DAP/14DAP | 1.03054 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 3.65219 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.97759 | 0.783 |
Mature Green Tomato/Ripe Tomato | 0.47952 | 0.018 |
Immature Eggplant/Mature Eggplant | 0.87328 | 0.254 |
Ripe Pepper/Ripe Tomato | 1.26576 | 1 |
Mature Eggplant/Ripe Tomato | 0.80803 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.00565 | 1 |
1-1-2/M82 | 0.99026 | |
12-2/M82 | 0.95571 | |
12-4/M82 | 0.98391 | 0.619 |
1-3/M82 | 1.54616 | 0.26 |
2-1-1/M82 | 0.99932 | |
2-1/M82 | 1.05987 | 1 |
2-6/M82 | 0.87373 | 0.501 |
3-2/M82 | 1.28435 | |
4-1-1/M82 | 0.50647 | |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 1.48505 | |
4-3/M82 | 1.37299 | 1 |
5-3/M82 | 1.25422 | 0.572 |
6-2/M82 | N/A | N/A |
6-3/M82 | 0.86797 | 0.916 |
7-1/M82 | 0.953 | |
7-2/M82 | 1.234 | 0.324 |
9-3-2/M82 | 1.38855 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.04686 | 1 |
IL7-5/WTpooled | 1.04766 | 1 |
IL7-3/WTpooled | 0.97456 | 1 |
IL12-4/WTpooled | 0.42101 | 0.539 |
IL1-4/WTpooled | 0.62694 | 0.402 |
WT/WTpooled | 0.8998 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.00561 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.05554 | 0.921 |
DC3000/delta hrp 6h | 0.97827 | 0.95 |
DC3000/delta hrp 12h | 1.19365 | 1 |
DC3000/delta hrp 24h | 1.06976 | 0.655 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.67048 | 0.028 |
DC3000 delta B/DC3000 delta AB | 0.65663 | 0.02 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.7605 | 1 |
Exp 36h | 1.56474 | 0.693 |
Exp 60h | 1.31847 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 1.23751 | 0.594 |
Var 12h I row2-row1 | 0.7343 | 0.338 |
Var 12h NI row2-row1 | 1.02642 | 1 |
Var 36h I row2-row1 | 0.92412 | 0.805 |
Var 36h NI row2-row1 | 1.38894 | 1 |
Var 60h I row2-row1 | 1.00821 | 1 |
Var 60h NI row2-row1 | 0.95047 | 0.977 |
Time course 0hI-0hNI | 0.98677 | 1 |
Time course 12hI-12hNI | 0.97541 | 0.874 |
Time course 36hI-36hNI | 0.93136 | 0.366 |
Time course 60hI-60hNI | 0.29631 | 0.005 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.21012 | 0.325 |
transgenic ySAMdc/azygous control (breaker) | 0.83604 | 0.49 |
transgenic ySAMdc/azygous control (red) | 1.14621 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.90184 | 0.237 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.92759 | 0.35 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.04217 | 1 |
Manapal/WT (break) | 1.60349 | 0.183 |
Manapal/WT (red) | 0.94994 | 0.607 |
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