Expression of 1-1-3.1.11.18

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.095110.912
27DAP/17DAP1.133921
39DAP/27DAP0.85950.549
41DAP/39DAP1.097090.88
42DAP/41DAP0.9941
43DAP/42DAP1.028021
47DAP/43DAP1.144670.563
52DAP/47DAP1.35070.596
57DAP/52DAP0.777690.778

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.979020.422
17DAP/reference1.081440.108
27DAP/reference1.041210.612
39DAP/reference1.133350.236
41DAP/reference1.174850.058
42DAP/reference0.949160.176
43DAP/reference1.098720.34
47DAP/reference0.898070.148
52DAP/reference0.874170.23
57DAP/reference0.916270.235

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.993180.763
27DAP/17DAP0.895550.537
39DAP/27DAP0.990580.984
41DAP/39DAP1.056560.883
42DAP/41DAP0.985830.83
43DAP/42DAP0.839790.121
47DAP/43DAP1.0980.758
52DAP/47DAP1.195590.467
57DAP/52DAP0.95330.617
57DAP/7DAP1.196111

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.78810.078
17DAP/reference0.743260.011
27DAP/reference0.701830.01
39DAP/reference0.808280.031
41DAP/reference0.856510.076
42DAP/reference0.815150.029
43DAP/reference0.818760.069
47DAP/reference0.917140.383
52DAP/reference0.805940.04
57DAP/reference0.961190.396

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.121280.258
17DAP/reference1.174740.024
27DAP/reference1.051181
39DAP/reference0.97430.469
41DAP/reference1.1450.091
42DAP/reference1.018511
43DAP/reference1.582510.085
47DAP/reference1.162110.014
52DAP/reference1.135270.279
57DAP/reference1.356560.08

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.836060.098
17DAP/reference1.017941
27DAP/reference0.762260.05
39DAP/reference0.926390.163
41DAP/reference0.947140.459
42DAP/reference0.93810.552
43DAP/reference0.823870.12
47DAP/reference1.056420.704
52DAP/reference0.894890.395
57DAP/reference0.787290.134

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.115540.966
26DAP/20DAP2.603370.172
34DAP/26DAP0.726170.261
51DAP/34DAP0.3870.049
52DAP/51DAP1.217370.089
53DAP/52DAP0.818860.1
55DAP/53DAP0.882930.544
57DAP/55DAP0.967960.828
62DAP/57DAP0.978350.994
68DAP/62DAP1.008070.834
68DAP/14DAP0.327130.086

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.79390.079

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper21.76570.058
Mature Green Tomato/Ripe Tomato1.148390.774
Immature Eggplant/Mature Eggplant0.58540.063
Ripe Pepper/Ripe Tomato0.902521
Mature Eggplant/Ripe Tomato4.140110.373

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.74524
1-1-2/M821.01753
12-2/M82N/AN/A
12-4/M821.128721
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M821.21796
4-3/M82N/AN/A
5-3/M820.820360.49
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M820.9401
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.92543
IL2-6/WTpooled1.038540.788
IL7-5/WTpooled1.55845
IL7-3/WTpooled1.003681
IL12-4/WTpooled1.09690.839
IL1-4/WTpooled1.154461
WT/WTpooled0.918571

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.077931

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h2.647930.521
DC3000/delta hrp 6h1.416331
DC3000/delta hrp 12h0.898051
DC3000/delta hrp 24h3.016560.046

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.165880.384
DC3000 delta B/DC3000 delta AB1.121530.403

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.029041
Exp 36h1.253311
Exp 60h1.163371

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.012071
Var 0h1.572790.936
Var 12h I row2-row11.117460.795
Var 12h NI row2-row11.201390.649
Var 36h I row2-row10.887371
Var 36h NI row2-row10.810490.584
Var 60h I row2-row10.727610.582
Var 60h NI row2-row10.995171
Time course 0hI-0hNI0.876710.121
Time course 12hI-12hNI0.991060.968
Time course 36hI-36hNI0.941350.366
Time course 60hI-60hNI1.063850.187

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.958430.529
transgenic ySAMdc/azygous control (breaker)1.229530.248
transgenic ySAMdc/azygous control (red)1.059820.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.046960.142

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.091810.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.26480.086
Manapal/WT (break)1.012991
Manapal/WT (red)1.009291