Expression of 1-1-3.1.11.18
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.09511 | 0.912 |
27DAP/17DAP | 1.13392 | 1 |
39DAP/27DAP | 0.8595 | 0.549 |
41DAP/39DAP | 1.09709 | 0.88 |
42DAP/41DAP | 0.994 | 1 |
43DAP/42DAP | 1.02802 | 1 |
47DAP/43DAP | 1.14467 | 0.563 |
52DAP/47DAP | 1.3507 | 0.596 |
57DAP/52DAP | 0.77769 | 0.778 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97902 | 0.422 |
17DAP/reference | 1.08144 | 0.108 |
27DAP/reference | 1.04121 | 0.612 |
39DAP/reference | 1.13335 | 0.236 |
41DAP/reference | 1.17485 | 0.058 |
42DAP/reference | 0.94916 | 0.176 |
43DAP/reference | 1.09872 | 0.34 |
47DAP/reference | 0.89807 | 0.148 |
52DAP/reference | 0.87417 | 0.23 |
57DAP/reference | 0.91627 | 0.235 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.99318 | 0.763 |
27DAP/17DAP | 0.89555 | 0.537 |
39DAP/27DAP | 0.99058 | 0.984 |
41DAP/39DAP | 1.05656 | 0.883 |
42DAP/41DAP | 0.98583 | 0.83 |
43DAP/42DAP | 0.83979 | 0.121 |
47DAP/43DAP | 1.098 | 0.758 |
52DAP/47DAP | 1.19559 | 0.467 |
57DAP/52DAP | 0.9533 | 0.617 |
57DAP/7DAP | 1.19611 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.7881 | 0.078 |
17DAP/reference | 0.74326 | 0.011 |
27DAP/reference | 0.70183 | 0.01 |
39DAP/reference | 0.80828 | 0.031 |
41DAP/reference | 0.85651 | 0.076 |
42DAP/reference | 0.81515 | 0.029 |
43DAP/reference | 0.81876 | 0.069 |
47DAP/reference | 0.91714 | 0.383 |
52DAP/reference | 0.80594 | 0.04 |
57DAP/reference | 0.96119 | 0.396 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.12128 | 0.258 |
17DAP/reference | 1.17474 | 0.024 |
27DAP/reference | 1.05118 | 1 |
39DAP/reference | 0.9743 | 0.469 |
41DAP/reference | 1.145 | 0.091 |
42DAP/reference | 1.01851 | 1 |
43DAP/reference | 1.58251 | 0.085 |
47DAP/reference | 1.16211 | 0.014 |
52DAP/reference | 1.13527 | 0.279 |
57DAP/reference | 1.35656 | 0.08 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.83606 | 0.098 |
17DAP/reference | 1.01794 | 1 |
27DAP/reference | 0.76226 | 0.05 |
39DAP/reference | 0.92639 | 0.163 |
41DAP/reference | 0.94714 | 0.459 |
42DAP/reference | 0.9381 | 0.552 |
43DAP/reference | 0.82387 | 0.12 |
47DAP/reference | 1.05642 | 0.704 |
52DAP/reference | 0.89489 | 0.395 |
57DAP/reference | 0.78729 | 0.134 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.11554 | 0.966 |
26DAP/20DAP | 2.60337 | 0.172 |
34DAP/26DAP | 0.72617 | 0.261 |
51DAP/34DAP | 0.387 | 0.049 |
52DAP/51DAP | 1.21737 | 0.089 |
53DAP/52DAP | 0.81886 | 0.1 |
55DAP/53DAP | 0.88293 | 0.544 |
57DAP/55DAP | 0.96796 | 0.828 |
62DAP/57DAP | 0.97835 | 0.994 |
68DAP/62DAP | 1.00807 | 0.834 |
68DAP/14DAP | 0.32713 | 0.086 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.7939 | 0.079 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 21.7657 | 0.058 |
Mature Green Tomato/Ripe Tomato | 1.14839 | 0.774 |
Immature Eggplant/Mature Eggplant | 0.5854 | 0.063 |
Ripe Pepper/Ripe Tomato | 0.90252 | 1 |
Mature Eggplant/Ripe Tomato | 4.14011 | 0.373 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.74524 | |
1-1-2/M82 | 1.01753 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.12872 | 1 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 1.21796 | |
4-3/M82 | N/A | N/A |
5-3/M82 | 0.82036 | 0.49 |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | 0.9401 | |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.92543 | |
IL2-6/WTpooled | 1.03854 | 0.788 |
IL7-5/WTpooled | 1.55845 | |
IL7-3/WTpooled | 1.00368 | 1 |
IL12-4/WTpooled | 1.0969 | 0.839 |
IL1-4/WTpooled | 1.15446 | 1 |
WT/WTpooled | 0.91857 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.07793 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 2.64793 | 0.521 |
DC3000/delta hrp 6h | 1.41633 | 1 |
DC3000/delta hrp 12h | 0.89805 | 1 |
DC3000/delta hrp 24h | 3.01656 | 0.046 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.16588 | 0.384 |
DC3000 delta B/DC3000 delta AB | 1.12153 | 0.403 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.02904 | 1 |
Exp 36h | 1.25331 | 1 |
Exp 60h | 1.16337 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.01207 | 1 |
Var 0h | 1.57279 | 0.936 |
Var 12h I row2-row1 | 1.11746 | 0.795 |
Var 12h NI row2-row1 | 1.20139 | 0.649 |
Var 36h I row2-row1 | 0.88737 | 1 |
Var 36h NI row2-row1 | 0.81049 | 0.584 |
Var 60h I row2-row1 | 0.72761 | 0.582 |
Var 60h NI row2-row1 | 0.99517 | 1 |
Time course 0hI-0hNI | 0.87671 | 0.121 |
Time course 12hI-12hNI | 0.99106 | 0.968 |
Time course 36hI-36hNI | 0.94135 | 0.366 |
Time course 60hI-60hNI | 1.06385 | 0.187 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.95843 | 0.529 |
transgenic ySAMdc/azygous control (breaker) | 1.22953 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.05982 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.04696 | 0.142 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.09181 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.2648 | 0.086 |
Manapal/WT (break) | 1.01299 | 1 |
Manapal/WT (red) | 1.00929 | 1 |
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