Expression of 1-1-3.1.11.2
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.17924 | 0.681 |
27DAP/17DAP | 1.01987 | 0.92 |
39DAP/27DAP | 2.02356 | 0.127 |
41DAP/39DAP | 0.98928 | 0.909 |
42DAP/41DAP | 1.16912 | 0.844 |
43DAP/42DAP | 1.19708 | 1 |
47DAP/43DAP | 0.83978 | 0.499 |
52DAP/47DAP | 1.31082 | 0.506 |
57DAP/52DAP | 0.83933 | 0.827 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.91365 | 0.188 |
17DAP/reference | 1.0338 | 0.874 |
27DAP/reference | 0.90779 | 0.075 |
39DAP/reference | 1.05602 | 0.352 |
41DAP/reference | 0.88859 | 0.201 |
42DAP/reference | 1.09052 | 0.021 |
43DAP/reference | 1.04434 | 0.617 |
47DAP/reference | 0.92302 | 0.065 |
52DAP/reference | 0.97232 | 0.475 |
57DAP/reference | 1.14687 | 0.018 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.1725 | 0.099 |
27DAP/17DAP | 0.8515 | 0.614 |
39DAP/27DAP | 1.09847 | 0.615 |
41DAP/39DAP | 0.93811 | 0.839 |
42DAP/41DAP | 1.05745 | 0.904 |
43DAP/42DAP | 1.06987 | 0.478 |
47DAP/43DAP | 1.00988 | 1 |
52DAP/47DAP | 1.01166 | 0.93 |
57DAP/52DAP | 1.19629 | 0.36 |
57DAP/7DAP | 1.35381 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.78784 | 0.063 |
17DAP/reference | 0.90777 | 0.094 |
27DAP/reference | 1.06922 | 0.371 |
39DAP/reference | 0.84611 | 0.021 |
41DAP/reference | 0.82802 | 0.03 |
42DAP/reference | 0.9229 | 0.063 |
43DAP/reference | 0.90194 | 0.145 |
47DAP/reference | 0.92322 | 0.383 |
52DAP/reference | 1.02432 | 0.781 |
57DAP/reference | 0.99233 | 0.61 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.06281 | 0.495 |
17DAP/reference | 0.99705 | 0.786 |
27DAP/reference | 1.02945 | 0.948 |
39DAP/reference | 1.0011 | 0.702 |
41DAP/reference | 0.90202 | 0.256 |
42DAP/reference | 1.07244 | 0.583 |
43DAP/reference | 1.04098 | 1 |
47DAP/reference | 1.11127 | 0.061 |
52DAP/reference | 1.11096 | 0.417 |
57DAP/reference | 1.0555 | 0.827 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.85971 | 0.098 |
17DAP/reference | 1.00486 | 1 |
27DAP/reference | 1.31653 | 0.075 |
39DAP/reference | 1.04682 | 0.422 |
41DAP/reference | 1.08268 | 0.357 |
42DAP/reference | 1.07339 | 0.313 |
43DAP/reference | 0.85679 | 0.102 |
47DAP/reference | 0.89309 | 0.161 |
52DAP/reference | 1.02765 | 1 |
57DAP/reference | 0.9186 | 0.315 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.31321 | 0.752 |
26DAP/20DAP | 0.96815 | 1 |
34DAP/26DAP | 1.09342 | 1 |
51DAP/34DAP | 1.22709 | 0.293 |
52DAP/51DAP | 0.89382 | 1 |
53DAP/52DAP | 1.02979 | 0.961 |
55DAP/53DAP | 1.14948 | 0.741 |
57DAP/55DAP | 1.19615 | 0.106 |
62DAP/57DAP | 0.87001 | 0.162 |
68DAP/62DAP | 0.98834 | 0.81 |
68DAP/14DAP | 0.95137 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 2.46066 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.27297 | 0.068 |
Mature Green Tomato/Ripe Tomato | 0.50881 | 0.017 |
Immature Eggplant/Mature Eggplant | 1.14084 | 0.288 |
Ripe Pepper/Ripe Tomato | 0.44671 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.38559 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 0.87409 | |
12-2/M82 | 1.07647 | 1 |
12-4/M82 | 0.88086 | 0.274 |
1-3/M82 | 2.01293 | 0.248 |
2-1-1/M82 | 1.13079 | 0.689 |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.1073 | |
3-2/M82 | 1.02411 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 1.12538 | |
4-3-2/M82 | 1.00024 | |
4-3/M82 | 0.94438 | 1 |
5-3/M82 | 1.03786 | 1 |
6-2/M82 | 2.17015 | |
6-3/M82 | 1.35183 | |
7-1/M82 | 1.26531 | |
7-2/M82 | 1.24992 | 0.324 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.91744 | 1 |
IL2-6/WTpooled | 1.03397 | 1 |
IL7-5/WTpooled | 1.17527 | 0.499 |
IL7-3/WTpooled | 0.96817 | 1 |
IL12-4/WTpooled | 0.99751 | 1 |
IL1-4/WTpooled | 0.93753 | 0.834 |
WT/WTpooled | 1.05168 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.13229 | 0.699 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.9573 | 1 |
DC3000/delta hrp 6h | 0.84012 | 0.95 |
DC3000/delta hrp 12h | 0.83376 | 1 |
DC3000/delta hrp 24h | 1.33535 | 0.422 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.06792 | 0.648 |
DC3000 delta B/DC3000 delta AB | 0.86685 | 0.261 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.87603 | 1 |
Exp 36h | 0.98334 | 0.943 |
Exp 60h | 0.94657 | 0.855 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.984 | 1 |
Var 0h | 1.44676 | 0.782 |
Var 12h I row2-row1 | 0.99998 | 1 |
Var 12h NI row2-row1 | 1.10492 | 0.34 |
Var 36h I row2-row1 | 1.20099 | 0.304 |
Var 36h NI row2-row1 | 1.11724 | 1 |
Var 60h I row2-row1 | 1.04921 | 0.523 |
Var 60h NI row2-row1 | 1.33524 | 0.904 |
Time course 0hI-0hNI | 0.99213 | 0.985 |
Time course 12hI-12hNI | 1.01925 | 1 |
Time course 36hI-36hNI | 0.99223 | 0.665 |
Time course 60hI-60hNI | 0.70117 | 0.009 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.98216 | 0.862 |
transgenic ySAMdc/azygous control (breaker) | 0.62659 | 0.173 |
transgenic ySAMdc/azygous control (red) | 0.95403 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.07403 | 0.05 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.96997 | 0.789 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.71515 | 0.172 |
Manapal/WT (break) | 0.95766 | 1 |
Manapal/WT (red) | 0.99225 | 1 |
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