Expression of 1-1-3.1.11.2

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.179240.681
27DAP/17DAP1.019870.92
39DAP/27DAP2.023560.127
41DAP/39DAP0.989280.909
42DAP/41DAP1.169120.844
43DAP/42DAP1.197081
47DAP/43DAP0.839780.499
52DAP/47DAP1.310820.506
57DAP/52DAP0.839330.827

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.913650.188
17DAP/reference1.03380.874
27DAP/reference0.907790.075
39DAP/reference1.056020.352
41DAP/reference0.888590.201
42DAP/reference1.090520.021
43DAP/reference1.044340.617
47DAP/reference0.923020.065
52DAP/reference0.972320.475
57DAP/reference1.146870.018

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.17250.099
27DAP/17DAP0.85150.614
39DAP/27DAP1.098470.615
41DAP/39DAP0.938110.839
42DAP/41DAP1.057450.904
43DAP/42DAP1.069870.478
47DAP/43DAP1.009881
52DAP/47DAP1.011660.93
57DAP/52DAP1.196290.36
57DAP/7DAP1.353811

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.787840.063
17DAP/reference0.907770.094
27DAP/reference1.069220.371
39DAP/reference0.846110.021
41DAP/reference0.828020.03
42DAP/reference0.92290.063
43DAP/reference0.901940.145
47DAP/reference0.923220.383
52DAP/reference1.024320.781
57DAP/reference0.992330.61

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.062810.495
17DAP/reference0.997050.786
27DAP/reference1.029450.948
39DAP/reference1.00110.702
41DAP/reference0.902020.256
42DAP/reference1.072440.583
43DAP/reference1.040981
47DAP/reference1.111270.061
52DAP/reference1.110960.417
57DAP/reference1.05550.827

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.859710.098
17DAP/reference1.004861
27DAP/reference1.316530.075
39DAP/reference1.046820.422
41DAP/reference1.082680.357
42DAP/reference1.073390.313
43DAP/reference0.856790.102
47DAP/reference0.893090.161
52DAP/reference1.027651
57DAP/reference0.91860.315

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.313210.752
26DAP/20DAP0.968151
34DAP/26DAP1.093421
51DAP/34DAP1.227090.293
52DAP/51DAP0.893821
53DAP/52DAP1.029790.961
55DAP/53DAP1.149480.741
57DAP/55DAP1.196150.106
62DAP/57DAP0.870010.162
68DAP/62DAP0.988340.81
68DAP/14DAP0.951371

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker2.460660.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.272970.068
Mature Green Tomato/Ripe Tomato0.508810.017
Immature Eggplant/Mature Eggplant1.140840.288
Ripe Pepper/Ripe Tomato0.446710.224
Mature Eggplant/Ripe Tomato0.385590.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M820.87409
12-2/M821.076471
12-4/M820.880860.274
1-3/M822.012930.248
2-1-1/M821.130790.689
2-1/M82N/AN/A
2-6/M821.1073
3-2/M821.02411
4-1-1/M82N/AN/A
4-1/M821.12538
4-3-2/M821.00024
4-3/M820.944381
5-3/M821.037861
6-2/M822.17015
6-3/M821.35183
7-1/M821.26531
7-2/M821.249920.324
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.917441
IL2-6/WTpooled1.033971
IL7-5/WTpooled1.175270.499
IL7-3/WTpooled0.968171
IL12-4/WTpooled0.997511
IL1-4/WTpooled0.937530.834
WT/WTpooled1.051681

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.132290.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.95731
DC3000/delta hrp 6h0.840120.95
DC3000/delta hrp 12h0.833761
DC3000/delta hrp 24h1.335350.422

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.067920.648
DC3000 delta B/DC3000 delta AB0.866850.261

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.876031
Exp 36h0.983340.943
Exp 60h0.946570.855

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.9841
Var 0h1.446760.782
Var 12h I row2-row10.999981
Var 12h NI row2-row11.104920.34
Var 36h I row2-row11.200990.304
Var 36h NI row2-row11.117241
Var 60h I row2-row11.049210.523
Var 60h NI row2-row11.335240.904
Time course 0hI-0hNI0.992130.985
Time course 12hI-12hNI1.019251
Time course 36hI-36hNI0.992230.665
Time course 60hI-60hNI0.701170.009

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.982160.862
transgenic ySAMdc/azygous control (breaker)0.626590.173
transgenic ySAMdc/azygous control (red)0.954031

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.074030.05

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.969970.789

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.715150.172
Manapal/WT (break)0.957661
Manapal/WT (red)0.992251