Expression of 1-1-3.1.11.4

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.378460.365
27DAP/17DAP1.390990.845
39DAP/27DAP1.241720.885
41DAP/39DAP1.177360.904
42DAP/41DAP1.636820.632
43DAP/42DAP1.263810.861
47DAP/43DAP1.022180.913
52DAP/47DAP0.99750.729
57DAP/52DAP0.740870.666

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/referenceN/AN/A
17DAP/referenceN/AN/A
27DAP/reference1.299930.648
39DAP/reference1.07202
41DAP/reference0.956620.814
42DAP/reference2.285360.012
43DAP/reference0.60702
47DAP/reference1.306920.463
52DAP/reference0.64232
57DAP/referenceN/AN/A

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.81230.687
27DAP/17DAP1.122760.976
39DAP/27DAP0.839550.737
41DAP/39DAP1.245840.801
42DAP/41DAP1.202670.166
43DAP/42DAP1.001160.928
47DAP/43DAP1.293780.52
52DAP/47DAP0.956530.848
57DAP/52DAP0.868450.507
57DAP/7DAP1.265320.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.821360.122
17DAP/reference0.739470.011
27DAP/reference0.765390.01
39DAP/reference0.749180.011
41DAP/reference0.792210.06
42DAP/reference0.633040.01
43DAP/reference0.705230.013
47DAP/reference0.776280.128
52DAP/reference0.646380.012
57DAP/reference0.638260.006

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.149280.43
17DAP/reference0.97520.548
27DAP/reference1.260910.66
39DAP/reference0.931970.314
41DAP/reference0.953190.584
42DAP/reference1.84730.596
43DAP/reference1.008740.892
47DAP/reference0.866760.069
52DAP/reference0.833560.086
57DAP/reference1.179280.277

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.878330.071
17DAP/reference0.964740.615
27DAP/reference0.814510.065
39DAP/reference0.745340.014
41DAP/reference0.786580.058
42DAP/reference0.657780.041
43DAP/reference0.653880.056
47DAP/reference0.992190.646
52DAP/reference0.77450.105
57DAP/reference0.838140.105

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.035730.966
26DAP/20DAP0.875061
34DAP/26DAP1.030291
51DAP/34DAP1.159770.108
52DAP/51DAP1.087720.662
53DAP/52DAP1.282570.783
55DAP/53DAP1.438160.131
57DAP/55DAP1.031741
62DAP/57DAP1.04981
68DAP/62DAP0.780580.195
68DAP/14DAP0.77840.121

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.004910.696

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe Tomato0.45991

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.043171
1-1-2/M820.86742
12-2/M821.02231
12-4/M821.267680.694
1-3/M820.60949
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M820.995381
3-2/M820.84622
4-1-1/M821.12791
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M821.332270.496
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M821.076131
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.179550.277
IL2-6/WTpooled0.98111
IL7-5/WTpooled0.857431
IL7-3/WTpooled0.895251
IL12-4/WTpooled1.062620.839
IL1-4/WTpooled0.977141
WT/WTpooled1.12381

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.028650.921
DC3000/delta hrp 6h1.379870.857
DC3000/delta hrp 12h1.191661
DC3000/delta hrp 24h0.938870.554

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0hN/AN/A
Var 12h I row2-row11.008491
Var 12h NI row2-row10.826860.713
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row11.668031
Var 60h I row2-row10.883280.952
Var 60h NI row2-row10.585770.977
Time course 0hI-0hNI1.094250.833
Time course 12hI-12hNI0.663870.624
Time course 36hI-36hNI1.026090.753
Time course 60hI-60hNI0.881780.646

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)1.243581
transgenic ySAMdc/azygous control (red)0.989721

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.218860.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.919211
Manapal/WT (break)0.559780.255
Manapal/WT (red)0.536230.36