Expression of 1-1-3.1.12.13
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.76862 | 0.249 |
27DAP/17DAP | 1.30556 | 0.829 |
39DAP/27DAP | 2.77629 | 0.128 |
41DAP/39DAP | 0.91396 | 0.636 |
42DAP/41DAP | 1.34087 | 0.527 |
43DAP/42DAP | 0.73687 | 0.554 |
47DAP/43DAP | 1.22264 | 0.4 |
52DAP/47DAP | 0.68499 | 0.214 |
57DAP/52DAP | 1.19924 | 0.935 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.34356 | 0.207 |
17DAP/reference | 0.5331 | 0.007 |
27DAP/reference | 0.60192 | 0.016 |
39DAP/reference | 0.68294 | 0.029 |
41DAP/reference | 0.57724 | 0.01 |
42DAP/reference | 0.91642 | 0.088 |
43DAP/reference | 1.14223 | 0.287 |
47DAP/reference | 1.1683 | 0.069 |
52DAP/reference | 0.68904 | 0.017 |
57DAP/reference | 1.03055 | 1 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.46662 | 0.041 |
27DAP/17DAP | 1.23897 | 0.706 |
39DAP/27DAP | 2.95607 | 0.034 |
41DAP/39DAP | 1.31724 | 0.06 |
42DAP/41DAP | 1.01573 | 1 |
43DAP/42DAP | 1.09226 | 0.134 |
47DAP/43DAP | 1.20664 | 0.036 |
52DAP/47DAP | 0.69868 | 0.078 |
57DAP/52DAP | 0.61419 | 0.152 |
57DAP/7DAP | 0.90312 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.36203 | 0.039 |
17DAP/reference | 0.93823 | 0.144 |
27DAP/reference | 1.08638 | 0.03 |
39DAP/reference | 0.75796 | 0.014 |
41DAP/reference | 0.78182 | 0.023 |
42DAP/reference | 0.8851 | 0.123 |
43DAP/reference | 0.89395 | 0.069 |
47DAP/reference | 0.9923 | 1 |
52DAP/reference | 0.90661 | 0.137 |
57DAP/reference | 0.76446 | 0.009 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.27694 | 0.144 |
17DAP/reference | 0.56874 | 0.003 |
27DAP/reference | 0.75855 | 0.071 |
39DAP/reference | 0.51436 | 0.016 |
41DAP/reference | 0.56119 | 0.021 |
42DAP/reference | 0.59042 | 0.014 |
43DAP/reference | 0.99096 | 0.581 |
47DAP/reference | 0.94839 | 0.4 |
52DAP/reference | 0.32422 | 0.003 |
57DAP/reference | 0.84281 | 0.068 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.25473 | 0.329 |
17DAP/reference | 0.74608 | 0.159 |
27DAP/reference | 0.73574 | 0.044 |
39DAP/reference | 0.98207 | 0.591 |
41DAP/reference | 0.8286 | 0.119 |
42DAP/reference | 0.90145 | 0.361 |
43DAP/reference | 0.94541 | 0.449 |
47DAP/reference | 0.64066 | 0.006 |
52DAP/reference | 1.07229 | 0.657 |
57DAP/reference | 0.72329 | 0.024 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.84459 | 1 |
26DAP/20DAP | 0.89586 | 1 |
34DAP/26DAP | 1.3857 | 1 |
51DAP/34DAP | 3.08538 | 0.041 |
52DAP/51DAP | 0.73716 | 1 |
53DAP/52DAP | 2.67767 | 0.085 |
55DAP/53DAP | 0.67965 | 0.027 |
57DAP/55DAP | 0.86504 | 0.49 |
62DAP/57DAP | 0.83185 | 0.28 |
68DAP/62DAP | 0.63723 | 0.055 |
68DAP/14DAP | 1.22553 | 0.179 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 2.51533 | 0.029 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.06825 | 0.037 |
Mature Green Tomato/Ripe Tomato | 0.59718 | 0.017 |
Immature Eggplant/Mature Eggplant | 7.53839 | 0.05 |
Ripe Pepper/Ripe Tomato | 2.21263 | 0.256 |
Mature Eggplant/Ripe Tomato | 0.35874 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.12742 | 0.877 |
1-1-2/M82 | 1.12814 | |
12-2/M82 | 1.16686 | 0.519 |
12-4/M82 | 0.93716 | 0.619 |
1-3/M82 | 2.19082 | 0.26 |
2-1-1/M82 | 1.33819 | 0.689 |
2-1/M82 | 0.85947 | 0.74 |
2-6/M82 | 1.7103 | 0.335 |
3-2/M82 | 0.88369 | |
4-1-1/M82 | 1.31378 | 0.977 |
4-1/M82 | 1.59185 | 1 |
4-3-2/M82 | 1.273 | 0.508 |
4-3/M82 | 1.10597 | 1 |
5-3/M82 | 0.89874 | 0.642 |
6-2/M82 | 1.48542 | |
6-3/M82 | 0.41641 | 0.796 |
7-1/M82 | 0.96882 | 1 |
7-2/M82 | 1.45145 | 0.324 |
9-3-2/M82 | 2.62273 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.06672 | 0.788 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.8088 | 0.294 |
IL12-4/WTpooled | 0.97666 | 1 |
IL1-4/WTpooled | 2.27421 | 1 |
WT/WTpooled | 0.97032 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.49171 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.99322 | 1 |
DC3000/delta hrp 6h | 1.03316 | 0.95 |
DC3000/delta hrp 12h | 0.98316 | 1 |
DC3000/delta hrp 24h | 1.24477 | 0.182 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 1.37652 | 0.324 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.2933 | 1 |
Exp 36h | 2.55238 | 0.489 |
Exp 60h | 1.60391 | 0.226 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.05099 | 1 |
Var 0h | 0.74511 | 1 |
Var 12h I row2-row1 | 1.7591 | 0.222 |
Var 12h NI row2-row1 | 4.47418 | 0.649 |
Var 36h I row2-row1 | 1.30163 | 0.291 |
Var 36h NI row2-row1 | 0.75524 | 0.61 |
Var 60h I row2-row1 | 0.98458 | 1 |
Var 60h NI row2-row1 | 0.68232 | 0.458 |
Time course 0hI-0hNI | 1.10241 | 0.662 |
Time course 12hI-12hNI | 3.61563 | 0.005 |
Time course 36hI-36hNI | 7.66272 | 0.004 |
Time course 60hI-60hNI | 24.6454 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.80054 | 0.324 |
transgenic ySAMdc/azygous control (breaker) | 1.10591 | 0.248 |
transgenic ySAMdc/azygous control (red) | 0.92108 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.05694 | 0.17 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.60759 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.91657 | 1 |
Manapal/WT (break) | 0.76384 | 1 |
Manapal/WT (red) | 0.89896 | 0.315 |
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