Expression of 1-1-3.1.12.13

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.768620.249
27DAP/17DAP1.305560.829
39DAP/27DAP2.776290.128
41DAP/39DAP0.913960.636
42DAP/41DAP1.340870.527
43DAP/42DAP0.736870.554
47DAP/43DAP1.222640.4
52DAP/47DAP0.684990.214
57DAP/52DAP1.199240.935

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.343560.207
17DAP/reference0.53310.007
27DAP/reference0.601920.016
39DAP/reference0.682940.029
41DAP/reference0.577240.01
42DAP/reference0.916420.088
43DAP/reference1.142230.287
47DAP/reference1.16830.069
52DAP/reference0.689040.017
57DAP/reference1.030551

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.466620.041
27DAP/17DAP1.238970.706
39DAP/27DAP2.956070.034
41DAP/39DAP1.317240.06
42DAP/41DAP1.015731
43DAP/42DAP1.092260.134
47DAP/43DAP1.206640.036
52DAP/47DAP0.698680.078
57DAP/52DAP0.614190.152
57DAP/7DAP0.903121

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.362030.039
17DAP/reference0.938230.144
27DAP/reference1.086380.03
39DAP/reference0.757960.014
41DAP/reference0.781820.023
42DAP/reference0.88510.123
43DAP/reference0.893950.069
47DAP/reference0.99231
52DAP/reference0.906610.137
57DAP/reference0.764460.009

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.276940.144
17DAP/reference0.568740.003
27DAP/reference0.758550.071
39DAP/reference0.514360.016
41DAP/reference0.561190.021
42DAP/reference0.590420.014
43DAP/reference0.990960.581
47DAP/reference0.948390.4
52DAP/reference0.324220.003
57DAP/reference0.842810.068

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.254730.329
17DAP/reference0.746080.159
27DAP/reference0.735740.044
39DAP/reference0.982070.591
41DAP/reference0.82860.119
42DAP/reference0.901450.361
43DAP/reference0.945410.449
47DAP/reference0.640660.006
52DAP/reference1.072290.657
57DAP/reference0.723290.024

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.844591
26DAP/20DAP0.895861
34DAP/26DAP1.38571
51DAP/34DAP3.085380.041
52DAP/51DAP0.737161
53DAP/52DAP2.677670.085
55DAP/53DAP0.679650.027
57DAP/55DAP0.865040.49
62DAP/57DAP0.831850.28
68DAP/62DAP0.637230.055
68DAP/14DAP1.225530.179

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker2.515330.029

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.068250.037
Mature Green Tomato/Ripe Tomato0.597180.017
Immature Eggplant/Mature Eggplant7.538390.05
Ripe Pepper/Ripe Tomato2.212630.256
Mature Eggplant/Ripe Tomato0.358741

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.127420.877
1-1-2/M821.12814
12-2/M821.166860.519
12-4/M820.937160.619
1-3/M822.190820.26
2-1-1/M821.338190.689
2-1/M820.859470.74
2-6/M821.71030.335
3-2/M820.88369
4-1-1/M821.313780.977
4-1/M821.591851
4-3-2/M821.2730.508
4-3/M821.105971
5-3/M820.898740.642
6-2/M821.48542
6-3/M820.416410.796
7-1/M820.968821
7-2/M821.451450.324
9-3-2/M822.62273

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.066720.788
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.80880.294
IL12-4/WTpooled0.976661
IL1-4/WTpooled2.274211
WT/WTpooled0.970321

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.491710.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.993221
DC3000/delta hrp 6h1.033160.95
DC3000/delta hrp 12h0.983161
DC3000/delta hrp 24h1.244770.182

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB1.376520.324

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.29331
Exp 36h2.552380.489
Exp 60h1.603910.226

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.050991
Var 0h0.745111
Var 12h I row2-row11.75910.222
Var 12h NI row2-row14.474180.649
Var 36h I row2-row11.301630.291
Var 36h NI row2-row10.755240.61
Var 60h I row2-row10.984581
Var 60h NI row2-row10.682320.458
Time course 0hI-0hNI1.102410.662
Time course 12hI-12hNI3.615630.005
Time course 36hI-36hNI7.662720.004
Time course 60hI-60hNI24.64540.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.800540.324
transgenic ySAMdc/azygous control (breaker)1.105910.248
transgenic ySAMdc/azygous control (red)0.921081

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.056940.17

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.607591

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.916571
Manapal/WT (break)0.763841
Manapal/WT (red)0.898960.315