Expression of 1-1-3.1.12.9

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.243380.512
27DAP/17DAP1.175920.804
39DAP/27DAP0.886680.573
41DAP/39DAP1.12470.545
42DAP/41DAP1.060740.971
43DAP/42DAP1.174790.875
47DAP/43DAP1.143930.618
52DAP/47DAP0.964290.823
57DAP/52DAP1.00440.985

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.970150.476
17DAP/reference0.827650.016
27DAP/reference0.920360.215
39DAP/reference1.084420.224
41DAP/reference1.038680.808
42DAP/reference0.978780.359
43DAP/reference0.885230.098
47DAP/reference1.000720.674
52DAP/reference0.921310.223
57DAP/reference1.000470.767

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.178250.037
27DAP/17DAP0.940740.614
39DAP/27DAP0.934440.456
41DAP/39DAP1.049320.623
42DAP/41DAP1.151150.031
43DAP/42DAP0.89690.172
47DAP/43DAP0.873930.247
52DAP/47DAP1.481440.261
57DAP/52DAP1.791230.044
57DAP/7DAP1.185881

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.873820.1
17DAP/reference0.886970.012
27DAP/reference0.923130.071
39DAP/reference0.862210.011
41DAP/reference0.830380.018
42DAP/reference0.814250.012
43DAP/reference0.835210.016
47DAP/reference0.858910.079
52DAP/reference0.796020.02
57DAP/reference0.832350.016

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.093490.538
17DAP/reference1.068430.557
27DAP/reference1.002210.735
39DAP/reference1.045480.935
41DAP/reference0.886720.148
42DAP/reference1.156070.281
43DAP/reference1.046491
47DAP/reference0.919020.173
52DAP/reference1.053921
57DAP/reference1.018341

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.879170.03
17DAP/reference0.940980.499
27DAP/reference0.872120.089
39DAP/reference0.841210.012
41DAP/reference1.053981
42DAP/reference1.003260.816
43DAP/reference0.991680.712
47DAP/reference0.919960.296
52DAP/reference0.853120.186
57DAP/reference1.062930.625

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.084470.966
26DAP/20DAP1.127721
34DAP/26DAP1.774240.819
51DAP/34DAP1.154240.962
52DAP/51DAP2.221030.035
53DAP/52DAP0.67920.049
55DAP/53DAP1.454480.048
57DAP/55DAP0.594210.059
62DAP/57DAP1.325980.257
68DAP/62DAP2.812120.682
68DAP/14DAP1.415780.046

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.302030.019

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.368970.073
Mature Green Tomato/Ripe Tomato1.281190.209
Immature Eggplant/Mature Eggplant0.561950.07
Ripe Pepper/Ripe Tomato13.49670.233
Mature Eggplant/Ripe Tomato3.66360.373

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.060020.877
1-1-2/M820.93397
12-2/M820.97544
12-4/M820.928760.25
1-3/M820.60624
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M821.06093
3-2/M820.952211
4-1-1/M82N/AN/A
4-1/M821.059691
4-3-2/M820.922711
4-3/M820.81106
5-3/M820.9141
6-2/M82N/AN/A
6-3/M821.102631
7-1/M82N/AN/A
7-2/M820.841830.578
9-3-2/M820.841391

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooled0.600580.554
IL1-4/WTpooled1.600250.426
WT/WTpooled0.978381

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.797050.197

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.009321
DC3000/delta hrp 6h1.024321
DC3000/delta hrp 12h0.998631
DC3000/delta hrp 24h0.851010.049

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.167120.052
DC3000 delta B/DC3000 delta AB1.179660.345

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.895971
Exp 36h0.783340.471
Exp 60h0.864320.522

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.012931
Var 0h0.533060.374
Var 12h I row2-row10.703120.363
Var 12h NI row2-row11.002321
Var 36h I row2-row11.005091
Var 36h NI row2-row11.514860.276
Var 60h I row2-row10.826040.306
Var 60h NI row2-row11.09921
Time course 0hI-0hNI0.860570.122
Time course 12hI-12hNI1.045610.81
Time course 36hI-36hNI0.809360.096
Time course 60hI-60hNI0.353350.005

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.185090.272
transgenic ySAMdc/azygous control (breaker)1.781530.162
transgenic ySAMdc/azygous control (red)0.970161

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.993910.757

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.637550.239

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)2.727780.083
Manapal/WT (break)1.990770.14
Manapal/WT (red)2.962150.134