Expression of 1-1-3.1.12.9
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.24338 | 0.512 |
27DAP/17DAP | 1.17592 | 0.804 |
39DAP/27DAP | 0.88668 | 0.573 |
41DAP/39DAP | 1.1247 | 0.545 |
42DAP/41DAP | 1.06074 | 0.971 |
43DAP/42DAP | 1.17479 | 0.875 |
47DAP/43DAP | 1.14393 | 0.618 |
52DAP/47DAP | 0.96429 | 0.823 |
57DAP/52DAP | 1.0044 | 0.985 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97015 | 0.476 |
17DAP/reference | 0.82765 | 0.016 |
27DAP/reference | 0.92036 | 0.215 |
39DAP/reference | 1.08442 | 0.224 |
41DAP/reference | 1.03868 | 0.808 |
42DAP/reference | 0.97878 | 0.359 |
43DAP/reference | 0.88523 | 0.098 |
47DAP/reference | 1.00072 | 0.674 |
52DAP/reference | 0.92131 | 0.223 |
57DAP/reference | 1.00047 | 0.767 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.17825 | 0.037 |
27DAP/17DAP | 0.94074 | 0.614 |
39DAP/27DAP | 0.93444 | 0.456 |
41DAP/39DAP | 1.04932 | 0.623 |
42DAP/41DAP | 1.15115 | 0.031 |
43DAP/42DAP | 0.8969 | 0.172 |
47DAP/43DAP | 0.87393 | 0.247 |
52DAP/47DAP | 1.48144 | 0.261 |
57DAP/52DAP | 1.79123 | 0.044 |
57DAP/7DAP | 1.18588 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.87382 | 0.1 |
17DAP/reference | 0.88697 | 0.012 |
27DAP/reference | 0.92313 | 0.071 |
39DAP/reference | 0.86221 | 0.011 |
41DAP/reference | 0.83038 | 0.018 |
42DAP/reference | 0.81425 | 0.012 |
43DAP/reference | 0.83521 | 0.016 |
47DAP/reference | 0.85891 | 0.079 |
52DAP/reference | 0.79602 | 0.02 |
57DAP/reference | 0.83235 | 0.016 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.09349 | 0.538 |
17DAP/reference | 1.06843 | 0.557 |
27DAP/reference | 1.00221 | 0.735 |
39DAP/reference | 1.04548 | 0.935 |
41DAP/reference | 0.88672 | 0.148 |
42DAP/reference | 1.15607 | 0.281 |
43DAP/reference | 1.04649 | 1 |
47DAP/reference | 0.91902 | 0.173 |
52DAP/reference | 1.05392 | 1 |
57DAP/reference | 1.01834 | 1 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.87917 | 0.03 |
17DAP/reference | 0.94098 | 0.499 |
27DAP/reference | 0.87212 | 0.089 |
39DAP/reference | 0.84121 | 0.012 |
41DAP/reference | 1.05398 | 1 |
42DAP/reference | 1.00326 | 0.816 |
43DAP/reference | 0.99168 | 0.712 |
47DAP/reference | 0.91996 | 0.296 |
52DAP/reference | 0.85312 | 0.186 |
57DAP/reference | 1.06293 | 0.625 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.08447 | 0.966 |
26DAP/20DAP | 1.12772 | 1 |
34DAP/26DAP | 1.77424 | 0.819 |
51DAP/34DAP | 1.15424 | 0.962 |
52DAP/51DAP | 2.22103 | 0.035 |
53DAP/52DAP | 0.6792 | 0.049 |
55DAP/53DAP | 1.45448 | 0.048 |
57DAP/55DAP | 0.59421 | 0.059 |
62DAP/57DAP | 1.32598 | 0.257 |
68DAP/62DAP | 2.81212 | 0.682 |
68DAP/14DAP | 1.41578 | 0.046 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.30203 | 0.019 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.36897 | 0.073 |
Mature Green Tomato/Ripe Tomato | 1.28119 | 0.209 |
Immature Eggplant/Mature Eggplant | 0.56195 | 0.07 |
Ripe Pepper/Ripe Tomato | 13.4967 | 0.233 |
Mature Eggplant/Ripe Tomato | 3.6636 | 0.373 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.06002 | 0.877 |
1-1-2/M82 | 0.93397 | |
12-2/M82 | 0.97544 | |
12-4/M82 | 0.92876 | 0.25 |
1-3/M82 | 0.60624 | |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.06093 | |
3-2/M82 | 0.95221 | 1 |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 1.05969 | 1 |
4-3-2/M82 | 0.92271 | 1 |
4-3/M82 | 0.81106 | |
5-3/M82 | 0.914 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | 1.10263 | 1 |
7-1/M82 | N/A | N/A |
7-2/M82 | 0.84183 | 0.578 |
9-3-2/M82 | 0.84139 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | 0.60058 | 0.554 |
IL1-4/WTpooled | 1.60025 | 0.426 |
WT/WTpooled | 0.97838 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.79705 | 0.197 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.00932 | 1 |
DC3000/delta hrp 6h | 1.02432 | 1 |
DC3000/delta hrp 12h | 0.99863 | 1 |
DC3000/delta hrp 24h | 0.85101 | 0.049 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.16712 | 0.052 |
DC3000 delta B/DC3000 delta AB | 1.17966 | 0.345 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.89597 | 1 |
Exp 36h | 0.78334 | 0.471 |
Exp 60h | 0.86432 | 0.522 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.01293 | 1 |
Var 0h | 0.53306 | 0.374 |
Var 12h I row2-row1 | 0.70312 | 0.363 |
Var 12h NI row2-row1 | 1.00232 | 1 |
Var 36h I row2-row1 | 1.00509 | 1 |
Var 36h NI row2-row1 | 1.51486 | 0.276 |
Var 60h I row2-row1 | 0.82604 | 0.306 |
Var 60h NI row2-row1 | 1.0992 | 1 |
Time course 0hI-0hNI | 0.86057 | 0.122 |
Time course 12hI-12hNI | 1.04561 | 0.81 |
Time course 36hI-36hNI | 0.80936 | 0.096 |
Time course 60hI-60hNI | 0.35335 | 0.005 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.18509 | 0.272 |
transgenic ySAMdc/azygous control (breaker) | 1.78153 | 0.162 |
transgenic ySAMdc/azygous control (red) | 0.97016 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.99391 | 0.757 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.63755 | 0.239 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 2.72778 | 0.083 |
Manapal/WT (break) | 1.99077 | 0.14 |
Manapal/WT (red) | 2.96215 | 0.134 |
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