Expression of 1-1-3.1.13.8
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.17022 | 0.788 |
27DAP/17DAP | 2.70163 | 0.112 |
39DAP/27DAP | 1.03568 | 1 |
41DAP/39DAP | 1.09896 | 0.921 |
42DAP/41DAP | 1.3056 | 0.66 |
43DAP/42DAP | 1.02152 | 0.937 |
47DAP/43DAP | 0.6492 | 0.122 |
52DAP/47DAP | 1.32822 | 0.518 |
57DAP/52DAP | 0.81824 | 0.748 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.95016 | 0.149 |
17DAP/reference | 0.9869 | 0.701 |
27DAP/reference | 1.11831 | 0.063 |
39DAP/reference | 1.04051 | 0.423 |
41DAP/reference | 0.96975 | 0.434 |
42DAP/reference | 1.16486 | 0.002 |
43DAP/reference | 1.13301 | 0.03 |
47DAP/reference | 1.04864 | 0.448 |
52DAP/reference | 0.92068 | 0.183 |
57DAP/reference | 1.20951 | 0.016 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.1542 | 0.719 |
27DAP/17DAP | 0.90687 | 0.295 |
39DAP/27DAP | 1.41996 | 0.069 |
41DAP/39DAP | 1.06864 | 0.827 |
42DAP/41DAP | 0.89577 | 0.384 |
43DAP/42DAP | 1.99785 | 0.014 |
47DAP/43DAP | 1.0661 | 0.713 |
52DAP/47DAP | 1.46104 | 0.155 |
57DAP/52DAP | 1.99097 | 0.034 |
57DAP/7DAP | 2.44065 | 0.249 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.8039 | 0.071 |
17DAP/reference | 0.87533 | 0.02 |
27DAP/reference | 0.9448 | 0.125 |
39DAP/reference | 0.94535 | 0.126 |
41DAP/reference | 0.9072 | 0.116 |
42DAP/reference | 1.01679 | 1 |
43DAP/reference | 1.15067 | 0.037 |
47DAP/reference | 1.01592 | 1 |
52DAP/reference | 0.89885 | 0.09 |
57DAP/reference | 1.53454 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.9191 | 0.248 |
17DAP/reference | 1.34451 | 0.029 |
27DAP/reference | 1.06709 | 0.455 |
39DAP/reference | 1.05515 | 0.657 |
41DAP/reference | 1.17943 | 0.172 |
42DAP/reference | 1.2484 | 0.074 |
43DAP/reference | 1.61168 | 0.01 |
47DAP/reference | 1.37008 | 0.008 |
52DAP/reference | 1.11169 | 0.24 |
57DAP/reference | 1.33697 | 0.045 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.79774 | 0.068 |
17DAP/reference | 0.95511 | 0.528 |
27DAP/reference | 0.94618 | 0.337 |
39DAP/reference | 0.92917 | 0.199 |
41DAP/reference | 1.05695 | 0.796 |
42DAP/reference | 0.97616 | 0.552 |
43DAP/reference | 1.03257 | 0.679 |
47DAP/reference | 1.45794 | 0.013 |
52DAP/reference | 1.08609 | 0.79 |
57DAP/reference | 1.30787 | 0.069 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.07686 | 0.966 |
26DAP/20DAP | 0.97695 | 1 |
34DAP/26DAP | 1.09607 | 1 |
51DAP/34DAP | 1.41146 | 0.042 |
52DAP/51DAP | 1.12828 | 0.467 |
53DAP/52DAP | 0.74259 | 0.079 |
55DAP/53DAP | 1.07993 | 0.764 |
57DAP/55DAP | 0.9141 | 0.623 |
62DAP/57DAP | 1.66328 | 0.006 |
68DAP/62DAP | 0.93254 | 0.722 |
68DAP/14DAP | 0.96887 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.70336 | 0.024 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.65266 | 0.162 |
Mature Green Tomato/Ripe Tomato | 0.7346 | 0.2 |
Immature Eggplant/Mature Eggplant | 0.39783 | 0.062 |
Ripe Pepper/Ripe Tomato | 0.53978 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.57887 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.0453 | 0.877 |
1-1-2/M82 | 1.23159 | 1 |
12-2/M82 | 1.2714 | 1 |
12-4/M82 | 1.04533 | 1 |
1-3/M82 | 1.21857 | 0.248 |
2-1-1/M82 | 1.19994 | 0.764 |
2-1/M82 | 0.96428 | 1 |
2-6/M82 | 0.90274 | 1 |
3-2/M82 | 1.10317 | 0.967 |
4-1-1/M82 | 1.0178 | 1 |
4-1/M82 | 1.26097 | 0.853 |
4-3-2/M82 | 0.78996 | 0.698 |
4-3/M82 | 1.03324 | 1 |
5-3/M82 | 0.99758 | 1 |
6-2/M82 | 1.05183 | 1 |
6-3/M82 | 1.01958 | 1 |
7-1/M82 | 1.07023 | 1 |
7-2/M82 | 0.91452 | 0.54 |
9-3-2/M82 | 1.0656 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.02899 | 1 |
IL2-6/WTpooled | 1.04918 | 0.531 |
IL7-5/WTpooled | 0.67026 | 1 |
IL7-3/WTpooled | 1.02521 | 1 |
IL12-4/WTpooled | 1.14872 | 0.557 |
IL1-4/WTpooled | 1.00604 | 1 |
WT/WTpooled | 1.10006 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.48451 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.09373 | 0.921 |
DC3000/delta hrp 6h | 0.9317 | 0.95 |
DC3000/delta hrp 12h | 1.03077 | 1 |
DC3000/delta hrp 24h | 1.0478 | 0.604 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.46472 | 0.229 |
DC3000 delta B/DC3000 delta AB | 1.57689 | 0.106 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.07515 | 1 |
Exp 36h | 1.11194 | 1 |
Exp 60h | 1.27561 | 0.227 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.0168 | 1 |
Var 0h | 0.85246 | 1 |
Var 12h I row2-row1 | 1.07616 | 0.201 |
Var 12h NI row2-row1 | 0.86917 | 0.438 |
Var 36h I row2-row1 | 1.02894 | 1 |
Var 36h NI row2-row1 | 1.03101 | 1 |
Var 60h I row2-row1 | 0.8526 | 0.439 |
Var 60h NI row2-row1 | 1.02796 | 1 |
Time course 0hI-0hNI | 1.08018 | 0.662 |
Time course 12hI-12hNI | 1.04686 | 0.593 |
Time course 36hI-36hNI | 2.15895 | 0.005 |
Time course 60hI-60hNI | 3.02065 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.0325 | 0.863 |
transgenic ySAMdc/azygous control (breaker) | 0.81302 | 0.15 |
transgenic ySAMdc/azygous control (red) | 0.91657 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.14701 | 0.04 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.35866 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.04939 | 0.307 |
Manapal/WT (break) | 1.04536 | 1 |
Manapal/WT (red) | 0.93447 | 0.36 |
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