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Expression of 1-1-3.1.13.8

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.170220.788
27DAP/17DAP2.701630.112
39DAP/27DAP1.035681
41DAP/39DAP1.098960.921
42DAP/41DAP1.30560.66
43DAP/42DAP1.021520.937
47DAP/43DAP0.64920.122
52DAP/47DAP1.328220.518
57DAP/52DAP0.818240.748

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.950160.149
17DAP/reference0.98690.701
27DAP/reference1.118310.063
39DAP/reference1.040510.423
41DAP/reference0.969750.434
42DAP/reference1.164860.002
43DAP/reference1.133010.03
47DAP/reference1.048640.448
52DAP/reference0.920680.183
57DAP/reference1.209510.016

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.15420.719
27DAP/17DAP0.906870.295
39DAP/27DAP1.419960.069
41DAP/39DAP1.068640.827
42DAP/41DAP0.895770.384
43DAP/42DAP1.997850.014
47DAP/43DAP1.06610.713
52DAP/47DAP1.461040.155
57DAP/52DAP1.990970.034
57DAP/7DAP2.440650.249

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.80390.071
17DAP/reference0.875330.02
27DAP/reference0.94480.125
39DAP/reference0.945350.126
41DAP/reference0.90720.116
42DAP/reference1.016791
43DAP/reference1.150670.037
47DAP/reference1.015921
52DAP/reference0.898850.09
57DAP/reference1.534540.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.91910.248
17DAP/reference1.344510.029
27DAP/reference1.067090.455
39DAP/reference1.055150.657
41DAP/reference1.179430.172
42DAP/reference1.24840.074
43DAP/reference1.611680.01
47DAP/reference1.370080.008
52DAP/reference1.111690.24
57DAP/reference1.336970.045

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.797740.068
17DAP/reference0.955110.528
27DAP/reference0.946180.337
39DAP/reference0.929170.199
41DAP/reference1.056950.796
42DAP/reference0.976160.552
43DAP/reference1.032570.679
47DAP/reference1.457940.013
52DAP/reference1.086090.79
57DAP/reference1.307870.069

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.076860.966
26DAP/20DAP0.976951
34DAP/26DAP1.096071
51DAP/34DAP1.411460.042
52DAP/51DAP1.128280.467
53DAP/52DAP0.742590.079
55DAP/53DAP1.079930.764
57DAP/55DAP0.91410.623
62DAP/57DAP1.663280.006
68DAP/62DAP0.932540.722
68DAP/14DAP0.968871

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.703360.024

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.652660.162
Mature Green Tomato/Ripe Tomato0.73460.2
Immature Eggplant/Mature Eggplant0.397830.062
Ripe Pepper/Ripe Tomato0.539780.224
Mature Eggplant/Ripe Tomato0.578870.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.04530.877
1-1-2/M821.231591
12-2/M821.27141
12-4/M821.045331
1-3/M821.218570.248
2-1-1/M821.199940.764
2-1/M820.964281
2-6/M820.902741
3-2/M821.103170.967
4-1-1/M821.01781
4-1/M821.260970.853
4-3-2/M820.789960.698
4-3/M821.033241
5-3/M820.997581
6-2/M821.051831
6-3/M821.019581
7-1/M821.070231
7-2/M820.914520.54
9-3-2/M821.06561

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.028991
IL2-6/WTpooled1.049180.531
IL7-5/WTpooled0.670261
IL7-3/WTpooled1.025211
IL12-4/WTpooled1.148720.557
IL1-4/WTpooled1.006041
WT/WTpooled1.100061

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.484511

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.093730.921
DC3000/delta hrp 6h0.93170.95
DC3000/delta hrp 12h1.030771
DC3000/delta hrp 24h1.04780.604

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.464720.229
DC3000 delta B/DC3000 delta AB1.576890.106

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.075151
Exp 36h1.111941
Exp 60h1.275610.227

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.01681
Var 0h0.852461
Var 12h I row2-row11.076160.201
Var 12h NI row2-row10.869170.438
Var 36h I row2-row11.028941
Var 36h NI row2-row11.031011
Var 60h I row2-row10.85260.439
Var 60h NI row2-row11.027961
Time course 0hI-0hNI1.080180.662
Time course 12hI-12hNI1.046860.593
Time course 36hI-36hNI2.158950.005
Time course 60hI-60hNI3.020650.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.03250.863
transgenic ySAMdc/azygous control (breaker)0.813020.15
transgenic ySAMdc/azygous control (red)0.916571

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.147010.04

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.358660.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.049390.307
Manapal/WT (break)1.045361
Manapal/WT (red)0.934470.36