Expression of 1-1-3.1.14.14
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.7537 | 0.173 |
27DAP/17DAP | 0.84539 | 0.602 |
39DAP/27DAP | 1.44397 | 0.339 |
41DAP/39DAP | 0.49608 | 0.045 |
42DAP/41DAP | 0.91435 | 1 |
43DAP/42DAP | 1.04652 | 0.937 |
47DAP/43DAP | 0.46034 | 0.052 |
52DAP/47DAP | 1.54616 | 0.521 |
57DAP/52DAP | 1.20292 | 0.952 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.72104 | 0.012 |
17DAP/reference | 1.0587 | 0.858 |
27DAP/reference | 0.65802 | 0.013 |
39DAP/reference | 0.63148 | 0.027 |
41DAP/reference | 0.71014 | 0.039 |
42DAP/reference | 1.11392 | 0.093 |
43DAP/reference | 0.75996 | 0.027 |
47DAP/reference | 0.80816 | 0.001 |
52DAP/reference | 0.43619 | 0.013 |
57DAP/reference | 0.61294 | 0.01 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.85628 | 0.17 |
27DAP/17DAP | 1.08818 | 0.541 |
39DAP/27DAP | 0.76365 | 0.044 |
41DAP/39DAP | 1.0813 | 1 |
42DAP/41DAP | 0.98494 | 0.801 |
43DAP/42DAP | 0.84677 | 0.035 |
47DAP/43DAP | 0.94299 | 0.712 |
52DAP/47DAP | 0.55541 | 0.041 |
57DAP/52DAP | 0.87808 | 0.463 |
57DAP/7DAP | 0.35455 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 2.83704 | 0.024 |
17DAP/reference | 1.85247 | 0.007 |
27DAP/reference | 1.31741 | 0.035 |
39DAP/reference | 1.20907 | 0.019 |
41DAP/reference | 1.35256 | 0.012 |
42DAP/reference | 1.23733 | 0.046 |
43DAP/reference | 1.06088 | 0.537 |
47DAP/reference | 1.08269 | 0.717 |
52DAP/reference | 1.01799 | 1 |
57DAP/reference | 0.93214 | 0.27 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.25115 | 0.3 |
17DAP/reference | 1.58596 | 0.012 |
27DAP/reference | 1.51004 | 0.054 |
39DAP/reference | 0.87758 | 0.093 |
41DAP/reference | 1.10831 | 0.525 |
42DAP/reference | 1.41957 | 0.011 |
43DAP/reference | 0.80688 | 0.117 |
47DAP/reference | 1.09586 | 0.572 |
52DAP/reference | 0.59614 | 0.003 |
57DAP/reference | 0.72687 | 0.03 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 2.15973 | 0.015 |
17DAP/reference | 1.39268 | 0.269 |
27DAP/reference | 1.48366 | 0.028 |
39DAP/reference | 1.40298 | 0.012 |
41DAP/reference | 1.03068 | 0.692 |
42DAP/reference | 0.96653 | 0.552 |
43DAP/reference | 1.10664 | 0.426 |
47DAP/reference | 0.51397 | 0.004 |
52DAP/reference | 0.90999 | 0.405 |
57DAP/reference | 0.73367 | 0.03 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.05485 | 1 |
26DAP/20DAP | 4.95087 | 0.097 |
34DAP/26DAP | 0.69518 | 0.171 |
51DAP/34DAP | 0.86669 | 0.498 |
52DAP/51DAP | 0.93251 | 1 |
53DAP/52DAP | 0.93188 | 0.703 |
55DAP/53DAP | 0.71761 | 0.025 |
57DAP/55DAP | 1.10971 | 0.854 |
62DAP/57DAP | 1.00024 | 1 |
68DAP/62DAP | 0.80289 | 0.429 |
68DAP/14DAP | 0.89684 | 0.121 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 3.9169 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.05478 | 0.417 |
Mature Green Tomato/Ripe Tomato | 1.92485 | 0.017 |
Immature Eggplant/Mature Eggplant | 0.91025 | 0.105 |
Ripe Pepper/Ripe Tomato | 1.32771 | 1 |
Mature Eggplant/Ripe Tomato | 1.55305 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.94368 | 0.907 |
1-1-2/M82 | 1.2504 | 1 |
12-2/M82 | 0.86921 | 0.955 |
12-4/M82 | 1.19069 | 1 |
1-3/M82 | 1.32078 | 0.479 |
2-1-1/M82 | 1.17824 | 1 |
2-1/M82 | 1.02136 | |
2-6/M82 | 1.41009 | 0.425 |
3-2/M82 | 1.02681 | |
4-1-1/M82 | 1.4446 | 1 |
4-1/M82 | 1.32201 | 1 |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 1.45535 | 1 |
5-3/M82 | 1.3514 | 0.455 |
6-2/M82 | N/A | N/A |
6-3/M82 | 0.66143 | 0.619 |
7-1/M82 | 1.09061 | 1 |
7-2/M82 | 2.14768 | |
9-3-2/M82 | 1.60243 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.73428 | 0.247 |
IL2-6/WTpooled | 0.89775 | 0.473 |
IL7-5/WTpooled | 1.06189 | 1 |
IL7-3/WTpooled | 0.81341 | 0.31 |
IL12-4/WTpooled | 0.82735 | 0.581 |
IL1-4/WTpooled | 0.95389 | 0.834 |
WT/WTpooled | 1.02127 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.18552 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.9986 | 1 |
DC3000/delta hrp 6h | 0.98946 | 0.95 |
DC3000/delta hrp 12h | 1.19244 | 1 |
DC3000/delta hrp 24h | 1.08066 | 0.604 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.31789 | 0.045 |
DC3000 delta B/DC3000 delta AB | 1.34473 | 0.144 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.18767 | 1 |
Exp 36h | 1.03075 | 1 |
Exp 60h | 1.14446 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.02648 | 1 |
Var 0h | 0.74776 | 0.933 |
Var 12h I row2-row1 | 0.91983 | 0.565 |
Var 12h NI row2-row1 | 1.0693 | 1 |
Var 36h I row2-row1 | 1.05616 | 1 |
Var 36h NI row2-row1 | 0.95912 | 0.469 |
Var 60h I row2-row1 | 0.87038 | 0.285 |
Var 60h NI row2-row1 | 0.89245 | 0.818 |
Time course 0hI-0hNI | 1.08187 | 0.662 |
Time course 12hI-12hNI | 1.02263 | 0.81 |
Time course 36hI-36hNI | 1.3487 | 0.006 |
Time course 60hI-60hNI | 1.39903 | 0.022 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.07115 | 0.654 |
transgenic ySAMdc/azygous control (breaker) | 1.17618 | 1 |
transgenic ySAMdc/azygous control (red) | 1.27016 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.30056 | 0.223 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.91041 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.06989 | 0.307 |
Manapal/WT (break) | 1.10372 | 0.381 |
Manapal/WT (red) | 0.93916 | 0.274 |
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