Expression of 1-1-3.1.14.14

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.75370.173
27DAP/17DAP0.845390.602
39DAP/27DAP1.443970.339
41DAP/39DAP0.496080.045
42DAP/41DAP0.914351
43DAP/42DAP1.046520.937
47DAP/43DAP0.460340.052
52DAP/47DAP1.546160.521
57DAP/52DAP1.202920.952

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.721040.012
17DAP/reference1.05870.858
27DAP/reference0.658020.013
39DAP/reference0.631480.027
41DAP/reference0.710140.039
42DAP/reference1.113920.093
43DAP/reference0.759960.027
47DAP/reference0.808160.001
52DAP/reference0.436190.013
57DAP/reference0.612940.01

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.856280.17
27DAP/17DAP1.088180.541
39DAP/27DAP0.763650.044
41DAP/39DAP1.08131
42DAP/41DAP0.984940.801
43DAP/42DAP0.846770.035
47DAP/43DAP0.942990.712
52DAP/47DAP0.555410.041
57DAP/52DAP0.878080.463
57DAP/7DAP0.354551

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.837040.024
17DAP/reference1.852470.007
27DAP/reference1.317410.035
39DAP/reference1.209070.019
41DAP/reference1.352560.012
42DAP/reference1.237330.046
43DAP/reference1.060880.537
47DAP/reference1.082690.717
52DAP/reference1.017991
57DAP/reference0.932140.27

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.251150.3
17DAP/reference1.585960.012
27DAP/reference1.510040.054
39DAP/reference0.877580.093
41DAP/reference1.108310.525
42DAP/reference1.419570.011
43DAP/reference0.806880.117
47DAP/reference1.095860.572
52DAP/reference0.596140.003
57DAP/reference0.726870.03

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.159730.015
17DAP/reference1.392680.269
27DAP/reference1.483660.028
39DAP/reference1.402980.012
41DAP/reference1.030680.692
42DAP/reference0.966530.552
43DAP/reference1.106640.426
47DAP/reference0.513970.004
52DAP/reference0.909990.405
57DAP/reference0.733670.03

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.054851
26DAP/20DAP4.950870.097
34DAP/26DAP0.695180.171
51DAP/34DAP0.866690.498
52DAP/51DAP0.932511
53DAP/52DAP0.931880.703
55DAP/53DAP0.717610.025
57DAP/55DAP1.109710.854
62DAP/57DAP1.000241
68DAP/62DAP0.802890.429
68DAP/14DAP0.896840.121

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker3.91690.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.054780.417
Mature Green Tomato/Ripe Tomato1.924850.017
Immature Eggplant/Mature Eggplant0.910250.105
Ripe Pepper/Ripe Tomato1.327711
Mature Eggplant/Ripe Tomato1.553050.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.943680.907
1-1-2/M821.25041
12-2/M820.869210.955
12-4/M821.190691
1-3/M821.320780.479
2-1-1/M821.178241
2-1/M821.02136
2-6/M821.410090.425
3-2/M821.02681
4-1-1/M821.44461
4-1/M821.322011
4-3-2/M82N/AN/A
4-3/M821.455351
5-3/M821.35140.455
6-2/M82N/AN/A
6-3/M820.661430.619
7-1/M821.090611
7-2/M822.14768
9-3-2/M821.602431

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.734280.247
IL2-6/WTpooled0.897750.473
IL7-5/WTpooled1.061891
IL7-3/WTpooled0.813410.31
IL12-4/WTpooled0.827350.581
IL1-4/WTpooled0.953890.834
WT/WTpooled1.021271

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.185521

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.99861
DC3000/delta hrp 6h0.989460.95
DC3000/delta hrp 12h1.192441
DC3000/delta hrp 24h1.080660.604

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.317890.045
DC3000 delta B/DC3000 delta AB1.344730.144

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.187671
Exp 36h1.030751
Exp 60h1.144460.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.026481
Var 0h0.747760.933
Var 12h I row2-row10.919830.565
Var 12h NI row2-row11.06931
Var 36h I row2-row11.056161
Var 36h NI row2-row10.959120.469
Var 60h I row2-row10.870380.285
Var 60h NI row2-row10.892450.818
Time course 0hI-0hNI1.081870.662
Time course 12hI-12hNI1.022630.81
Time course 36hI-36hNI1.34870.006
Time course 60hI-60hNI1.399030.022

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.071150.654
transgenic ySAMdc/azygous control (breaker)1.176181
transgenic ySAMdc/azygous control (red)1.270160.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.300560.223

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.910410.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.069890.307
Manapal/WT (break)1.103720.381
Manapal/WT (red)0.939160.274