Expression of 1-1-3.1.14.16

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.654890.042
27DAP/17DAP0.893220.717
39DAP/27DAP1.390240.277
41DAP/39DAP0.670460.094
42DAP/41DAP0.678290.774
43DAP/42DAP1.044641
47DAP/43DAP0.539480.055
52DAP/47DAP1.513370.401
57DAP/52DAP1.220510.946

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.692780.026
17DAP/reference1.021240.777
27DAP/reference0.768770.023
39DAP/reference0.701540.06
41DAP/reference0.716980.031
42DAP/reference1.136180.004
43DAP/reference0.910750.247
47DAP/reference0.907770.025
52DAP/reference0.639560.013
57DAP/reference0.913070.199

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.843180.116
27DAP/17DAP1.066620.685
39DAP/27DAP0.792490.062
41DAP/39DAP1.147911
42DAP/41DAP1.015820.902
43DAP/42DAP0.875710.045
47DAP/43DAP0.947140.666
52DAP/47DAP0.573790.041
57DAP/52DAP0.806470.266
57DAP/7DAP0.336350.219

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.806240.024
17DAP/reference1.864750.007
27DAP/reference1.35690.035
39DAP/reference1.220770.019
41DAP/reference1.358480.013
42DAP/reference1.328990.021
43DAP/reference1.09670.307
47DAP/reference1.223480.304
52DAP/reference1.038730.832
57DAP/reference0.954740.341

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.13690.589
17DAP/reference1.354680.027
27DAP/reference1.451090.039
39DAP/reference1.095960.255
41DAP/reference1.387970.013
42DAP/reference1.451260.009
43DAP/reference0.888660.243
47DAP/reference1.200610.067
52DAP/reference0.840090.093
57DAP/reference0.759460.054

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.980690.016
17DAP/reference1.387860.337
27DAP/reference1.31480.056
39DAP/reference1.401060.009
41DAP/reference1.09040.077
42DAP/reference1.010161
43DAP/reference1.132380.186
47DAP/reference0.757860.072
52DAP/reference0.876080.232
57DAP/reference1.162380.316

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.099250.966
26DAP/20DAP4.80040.097
34DAP/26DAP0.665880.115
51DAP/34DAP1.684520.032
52DAP/51DAP0.849411
53DAP/52DAP0.946490.79
55DAP/53DAP0.639430.019
57DAP/55DAP1.079830.975
62DAP/57DAP1.338230.303
68DAP/62DAP2.033820.074
68DAP/14DAP3.195280.022

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker2.581510.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.038090.666
Mature Green Tomato/Ripe Tomato2.091020.015
Immature Eggplant/Mature Eggplant0.898850.096
Ripe Pepper/Ripe Tomato1.607411
Mature Eggplant/Ripe Tomato1.740980.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.056081
1-1-2/M821.32072
12-2/M820.891770.955
12-4/M821.130281
1-3/M821.544490.26
2-1-1/M820.855780.465
2-1/M821.275480.328
2-6/M821.167280.594
3-2/M821.04156
4-1-1/M821.468511
4-1/M822.104190.853
4-3-2/M821.789850.241
4-3/M821.56570.268
5-3/M821.321190.455
6-2/M82N/AN/A
6-3/M820.675230.982
7-1/M821.125910.539
7-2/M821.554360.291
9-3-2/M821.30743

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.691260.277
IL2-6/WTpooled1.023870.659
IL7-5/WTpooled1.173360.792
IL7-3/WTpooled0.993651
IL12-4/WTpooled0.985041
IL1-4/WTpooled1.031051
WT/WTpooled0.904931

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.100411

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.928991
DC3000/delta hrp 6h0.870690.95
DC3000/delta hrp 12h1.233461
DC3000/delta hrp 24h1.095620.411

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.06772
DC3000 delta B/DC3000 delta AB1.409830.112

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.19531
Exp 36h1.065451
Exp 60h1.167260.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.965411
Var 0h0.761260.933
Var 12h I row2-row10.92630.627
Var 12h NI row2-row11.089240.649
Var 36h I row2-row10.993271
Var 36h NI row2-row10.982740.743
Var 60h I row2-row10.872070.285
Var 60h NI row2-row10.889950.818
Time course 0hI-0hNI1.080340.662
Time course 12hI-12hNI1.042450.741
Time course 36hI-36hNI1.302030.007
Time course 60hI-60hNI1.375810.017

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.067080.654
transgenic ySAMdc/azygous control (breaker)1.047141
transgenic ySAMdc/azygous control (red)1.25960.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.279530.213

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.915560.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.069680.307
Manapal/WT (break)1.048831
Manapal/WT (red)0.92070.199