Expression of 1-1-3.1.14.17
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.29672 | 0.394 |
27DAP/17DAP | 1.2602 | 0.845 |
39DAP/27DAP | 1.48477 | 0.38 |
41DAP/39DAP | 1.12002 | 0.788 |
42DAP/41DAP | 0.99341 | 1 |
43DAP/42DAP | 0.86213 | 0.801 |
47DAP/43DAP | 0.77606 | 0.36 |
52DAP/47DAP | 1.73923 | 0.346 |
57DAP/52DAP | 0.85961 | 0.81 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.81646 | 0.052 |
17DAP/reference | 0.87704 | 0.074 |
27DAP/reference | 0.93928 | 0.428 |
39DAP/reference | 0.81903 | 0.053 |
41DAP/reference | 0.69302 | 0.014 |
42DAP/reference | 1.09513 | 0.08 |
43DAP/reference | 0.9695 | 0.653 |
47DAP/reference | 1.00098 | 0.636 |
52DAP/reference | 1.07138 | 0.8 |
57DAP/reference | 1.13062 | 0.091 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.39466 | 0.05 |
27DAP/17DAP | 0.79273 | 0.312 |
39DAP/27DAP | 1.24282 | 0.347 |
41DAP/39DAP | 0.98152 | 0.973 |
42DAP/41DAP | 1.16581 | 0.47 |
43DAP/42DAP | 1.30504 | 0.018 |
47DAP/43DAP | 1.00276 | 0.99 |
52DAP/47DAP | 1.14711 | 0.851 |
57DAP/52DAP | 1.25202 | 0.298 |
57DAP/7DAP | 0.86417 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.18469 | 0.085 |
17DAP/reference | 0.88002 | 0.144 |
27DAP/reference | 0.98358 | 0.571 |
39DAP/reference | 0.90368 | 0.198 |
41DAP/reference | 1.00331 | 0.646 |
42DAP/reference | 1.39869 | 0.03 |
43DAP/reference | 1.31679 | 0.043 |
47DAP/reference | 1.23015 | 0.124 |
52DAP/reference | 0.88804 | 0.213 |
57DAP/reference | 0.96792 | 0.382 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.83224 | 0.17 |
17DAP/reference | 0.8186 | 0.02 |
27DAP/reference | 0.86601 | 0.144 |
39DAP/reference | 0.9334 | 0.227 |
41DAP/reference | 1.05683 | 0.735 |
42DAP/reference | 0.97399 | 0.534 |
43DAP/reference | 0.84766 | 0.075 |
47DAP/reference | 1.0214 | 1 |
52DAP/reference | 0.81481 | 0.072 |
57DAP/reference | 0.61764 | 0.099 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.81757 | 0.057 |
17DAP/reference | 0.86388 | 0.198 |
27DAP/reference | 1.11584 | 0.075 |
39DAP/reference | 0.96724 | 0.43 |
41DAP/reference | 1.0084 | 0.826 |
42DAP/reference | 0.96215 | 0.552 |
43DAP/reference | 0.92749 | 0.384 |
47DAP/reference | 0.9305 | 0.306 |
52DAP/reference | 1.07083 | 0.759 |
57DAP/reference | 1.03614 | 0.878 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.9762 | 1 |
26DAP/20DAP | 0.94263 | 1 |
34DAP/26DAP | 1.18462 | 1 |
51DAP/34DAP | 1.34267 | 0.154 |
52DAP/51DAP | 0.90039 | 1 |
53DAP/52DAP | 1.15248 | 0.662 |
55DAP/53DAP | 0.68287 | 0.13 |
57DAP/55DAP | 1.01905 | 0.97 |
62DAP/57DAP | 0.81705 | 0.466 |
68DAP/62DAP | 1.31077 | 0.919 |
68DAP/14DAP | 0.91229 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 4.38401 | 0.016 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.78037 | 0.058 |
Mature Green Tomato/Ripe Tomato | 0.42706 | 0.086 |
Immature Eggplant/Mature Eggplant | 9.62091 | 0.042 |
Ripe Pepper/Ripe Tomato | 0.21403 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.13774 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.99708 | 1 |
1-1-2/M82 | N/A | N/A |
12-2/M82 | 1.3139 | |
12-4/M82 | 0.80405 | 0.358 |
1-3/M82 | 2.86444 | |
2-1-1/M82 | 0.94395 | 1 |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.0398 | 1 |
3-2/M82 | 1.19005 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 1.23411 | 1 |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 0.98576 | 1 |
5-3/M82 | 1.29309 | 1 |
6-2/M82 | 2.32236 | |
6-3/M82 | 0.72377 | |
7-1/M82 | 1.43599 | |
7-2/M82 | 1.67849 | 0.385 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.0596 | 1 |
IL2-6/WTpooled | 0.92282 | 1 |
IL7-5/WTpooled | 1.31767 | 1 |
IL7-3/WTpooled | 0.82692 | 0.294 |
IL12-4/WTpooled | 0.94307 | 0.71 |
IL1-4/WTpooled | 1.51147 | 1 |
WT/WTpooled | 0.94 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.14299 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.73529 | 0.063 |
DC3000/delta hrp 6h | 1.01748 | 0.95 |
DC3000/delta hrp 12h | 0.89598 | 1 |
DC3000/delta hrp 24h | 1.02122 | 0.728 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.6876 | 0.25 |
DC3000 delta B/DC3000 delta AB | 1.08993 | 0.472 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.96056 | 1 |
Exp 36h | 1.1547 | 1 |
Exp 60h | 1.02791 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.9586 | 1 |
Var 0h | 0.93534 | 1 |
Var 12h I row2-row1 | 0.97202 | 0.856 |
Var 12h NI row2-row1 | 1.16415 | 0.34 |
Var 36h I row2-row1 | 1.16346 | 0.908 |
Var 36h NI row2-row1 | 1.19988 | 1 |
Var 60h I row2-row1 | 0.92412 | 0.952 |
Var 60h NI row2-row1 | 1.00633 | 1 |
Time course 0hI-0hNI | 1.00436 | 1 |
Time course 12hI-12hNI | 0.95027 | 0.6 |
Time course 36hI-36hNI | 0.93619 | 0.38 |
Time course 60hI-60hNI | 0.63383 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.02601 | 1 |
transgenic ySAMdc/azygous control (breaker) | 0.53321 | 0.173 |
transgenic ySAMdc/azygous control (red) | 1.17273 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.06761 | 0.163 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.9377 | 0.59 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.70254 | 1 |
Manapal/WT (break) | 0.95385 | 1 |
Manapal/WT (red) | 0.68767 | 0.181 |
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